Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0156
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 84 9e-17
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 55 5e-08
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 54 1e-07
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07
SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26) 52 3e-07
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 52 3e-07
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 52 6e-07
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 52 6e-07
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 48 5e-06
SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44) 47 2e-05
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 46 2e-05
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07) 44 1e-04
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 44 2e-04
SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38) 44 2e-04
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 43 3e-04
SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 8e-04
SB_21487| Best HMM Match : MAM (HMM E-Value=0) 41 0.001
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 41 0.001
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45) 41 0.001
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27) 40 0.001
SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16) 40 0.002
SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23) 39 0.004
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22) 38 0.010
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.013
SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32) 37 0.013
SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.018
SB_43823| Best HMM Match : MAM (HMM E-Value=0) 37 0.018
SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24) 37 0.018
SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11) 36 0.023
SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16) 36 0.031
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_2014| Best HMM Match : MAM (HMM E-Value=0) 36 0.041
SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.041
SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.071
SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064) 34 0.094
SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17) 34 0.12
SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18) 33 0.22
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 33 0.29
SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29) 32 0.38
SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15) 32 0.38
SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.50
SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_17635| Best HMM Match : CUB (HMM E-Value=0) 31 0.67
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 31 0.67
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_52147| Best HMM Match : EGF (HMM E-Value=0) 31 1.2
SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19) 31 1.2
SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_34641| Best HMM Match : Mucin (HMM E-Value=4.3) 30 2.0
SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10) 29 2.7
SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23) 29 2.7
SB_32607| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_22922| Best HMM Match : DUF1599 (HMM E-Value=4.2) 29 2.7
SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0) 29 2.7
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 29 3.6
SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0) 29 3.6
SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21) 29 3.6
SB_8486| Best HMM Match : Granulin (HMM E-Value=0) 29 3.6
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 29 3.6
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0) 28 6.2
SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3) 28 6.2
SB_25743| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08) 28 6.2
SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07) 28 8.2
SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71) 28 8.2
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 84.2 bits (199), Expect = 9e-17
Identities = 38/68 (55%), Positives = 48/68 (70%)
Frame = +2
Query: 485 APPCDSSQCVLPDCFCSEDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNGKR 664
A C C LP+CFCS G ++PG L +++PQMI +TFDDAIN +Y++IFNGK
Sbjct: 566 AERCHPDVCKLPNCFCS--GALVPGGLNPKEIPQMIMLTFDDAINGQVYPVYQKIFNGK- 622
Query: 665 KNPNGCDI 688
KNPNGCDI
Sbjct: 623 KNPNGCDI 630
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 59.3 bits (137), Expect = 3e-09
Identities = 33/70 (47%), Positives = 38/70 (54%)
Frame = +2
Query: 479 NRAPPCDSSQCVLPDCFCSEDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNG 658
N A CD +C P+C CS+D PG L PQ+I ITFDD I N E YK+ G
Sbjct: 25 NVAEKCDLEKCQPPNCRCSDDFQP-PGGLSPALTPQIIMITFDDDITVINYEQYKDAVKG 83
Query: 659 KRKNPNGCDI 688
NPNGC I
Sbjct: 84 -FTNPNGCPI 92
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/82 (30%), Positives = 35/82 (42%)
Frame = +2
Query: 296 CKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND 475
C+ +N E + T C G CG+ CI C+ + DCGD SDEN+C
Sbjct: 168 CRCQNGEVLVNGQCKTLSGTCAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNCPYSTC 227
Query: 476 PNRAPPCDSSQCVLPDCFCSED 541
CD+ +C+ C D
Sbjct: 228 NPSQFKCDNGRCISSKWRCDHD 249
Score = 34.7 bits (76), Expect = 0.071
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C C + CI C+ + DCGD SDE +C
Sbjct: 227 CNPSQFKCDNGRCISSKWRCDHDNDCGDMSDERNC 261
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 54.0 bits (124), Expect = 1e-07
Identities = 25/83 (30%), Positives = 38/83 (45%)
Frame = +2
Query: 284 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 463
A+ N + + IKP C G C + CI + L+C+G+ C DGSDE C+
Sbjct: 67 AIANVSITTRSCAIKPTFSFPGHSCGSGEFQCDNGKCIRKNLYCDGDFACVDGSDETRCE 126
Query: 464 IDNDPNRAPPCDSSQCVLPDCFC 532
P+ C S +C++ C
Sbjct: 127 C---PSNMFLCPSGECIMGTQLC 146
Score = 36.7 bits (81), Expect = 0.018
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C C CI C+G+KDC D +DE +C
Sbjct: 127 CPSNMFLCPSGECIMGTQLCDGKKDCTDNTDEKNC 161
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +2
Query: 536 EDGTVIPGDLPARDVPQMITITFDDAINNNNIELYKEIFNGKRKNPNGCDI 688
E G +P L + +PQMI +TFDDAIN Y+ + N KNPNGC++
Sbjct: 1551 ECGASVPNGLDPKQIPQMIMLTFDDAINMQVFPFYQTLLN-DTKNPNGCNV 1600
>SB_48688| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-26)
Length = 351
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/60 (40%), Positives = 28/60 (46%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 535
C+ C D C+ FCNGE DC DGSDE SC DN + C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSC--DNSCSSRHACADGTCVTWSLTCN 131
Score = 46.0 bits (104), Expect = 3e-05
Identities = 20/40 (50%), Positives = 22/40 (55%)
Frame = +2
Query: 374 ACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP 493
AC D TC+ L CNG DC DGSDE +D R PP
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDEPKLCGKHDTMRPPP 156
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/91 (24%), Positives = 38/91 (41%)
Frame = +2
Query: 287 VKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 466
V +L + ++PL C C + C+ + + C+G+ C D SDE +C
Sbjct: 15 VSRIRLTTESCHMQPLHAHPSHSCHGDQFQCLNGMCVGQEVRCDGDYACVDHSDERNCAC 74
Query: 467 DNDPNRAPPCDSSQCVLPDCFCSEDGTVIPG 559
+ + C +CV P FC+ + G
Sbjct: 75 RSAEFK---CPDGKCVHPSKFCNGESDCTDG 102
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 52.4 bits (120), Expect = 3e-07
Identities = 24/60 (40%), Positives = 28/60 (46%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 535
C+ C D C+ FCNGE DC DGSDE SC DN + C CV C+
Sbjct: 74 CRSAEFKCPDGKCVHPSKFCNGESDCTDGSDEWSC--DNSCSSRHACADGTCVTWSLTCN 131
Score = 41.5 bits (93), Expect = 6e-04
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +2
Query: 374 ACGDSTCIERGLFCNGEKDCGDGSDE 451
AC D TC+ L CNG DC DGSDE
Sbjct: 117 ACADGTCVTWSLTCNGVSDCQDGSDE 142
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/91 (25%), Positives = 38/91 (41%)
Frame = +2
Query: 287 VKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 466
V +L + ++PL C C + C+ + L C+G+ C D SDE +C
Sbjct: 15 VSRIRLTTESCHMQPLHAHPSHSCHGDQFQCLNGMCVGQELRCDGDYACVDHSDERNCAC 74
Query: 467 DNDPNRAPPCDSSQCVLPDCFCSEDGTVIPG 559
+ + C +CV P FC+ + G
Sbjct: 75 RSAEFK---CPDGKCVHPSKFCNGESDCTDG 102
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/66 (36%), Positives = 27/66 (40%)
Frame = +2
Query: 344 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPD 523
E C C TCI R C+ + DCGDGSDE C PN C S C+
Sbjct: 2453 ERATCDVTQFRCKTGTCITREWRCDHQDDCGDGSDEQQCVNYTCPNHTFKCTSGHCIANS 2512
Query: 524 CFCSED 541
C D
Sbjct: 2513 SVCDGD 2518
Score = 50.0 bits (114), Expect = 2e-06
Identities = 25/69 (36%), Positives = 31/69 (44%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 535
C+ G +C + CI C+ E DCGD SDE C P C + +CV D C
Sbjct: 2209 CEPGHFSCNNGRCINAKWVCDRENDCGDNSDEARCPEVTCPAHEFTCPNGRCVSYDFLC- 2267
Query: 536 EDGTVIPGD 562
DG GD
Sbjct: 2268 -DGEDDCGD 2275
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 356 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPC-DSSQCVLPDCF 529
C+ AC + CI+R C+GE DCGD SDE C +++ N C ++S+C+
Sbjct: 1087 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 1146
Query: 530 CSEDGTV 550
C DG V
Sbjct: 1147 C--DGRV 1151
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/62 (32%), Positives = 27/62 (43%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 535
C C + C+ R C+G DC DGSDE +C + C S +C+ D C
Sbjct: 3007 CAPYHFRCDNFRCVYRSRVCDGIDDCRDGSDERNCHVTTCTADQFRCPSGRCISRDWLCD 3066
Query: 536 ED 541
D
Sbjct: 3067 GD 3068
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/126 (28%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Frame = +2
Query: 170 EGDN-CRDVIQCTASGIQAIRCPAGLFFDIEKQTC---DWK-DAVKNCKLKNKERKIKPL 334
+GDN C D A G + CPAG + C +W+ D +C+ + E +
Sbjct: 3066 DGDNDCGDSSDEKA-GECHVTCPAGQARCATGRRCIPSEWRCDGESDCEDGSDENSAQCT 3124
Query: 335 LYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCV 514
T + F D CI C+GE DC DGSDE C C S +C+
Sbjct: 3125 AIT---CSAETFRCYSDRRCIPNQWKCDGESDCNDGSDEKGCPPKQCAKHQYRCASGRCI 3181
Query: 515 LPDCFC 532
C
Sbjct: 3182 SASWVC 3187
Score = 45.6 bits (103), Expect = 4e-05
Identities = 34/120 (28%), Positives = 43/120 (35%), Gaps = 4/120 (3%)
Frame = +2
Query: 167 GEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTC---DWK-DAVKNCKLKNKERKIKPL 334
GE D C D ++ AI C A F + C WK D +C + E+ P
Sbjct: 3108 GESD-CEDGSDENSAQCTAITCSAETFRCYSDRRCIPNQWKCDGESDCNDGSDEKGCPP- 3165
Query: 335 LYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCV 514
C C CI C+ DCGDGSDE C + CD C+
Sbjct: 3166 -----KQCAKHQYRCASGRCISASWVCDHVNDCGDGSDEQQCINRTCADGQFSCDDGLCI 3220
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/61 (36%), Positives = 26/61 (42%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 535
C DG +C D CI R C+G DC D SDE P R C + CV C
Sbjct: 3207 CADGQFSCDDGLCIARAWKCDGMMDCADASDEKGSGHRWCPQRLYQCINHVCVDRRWLCD 3266
Query: 536 E 538
+
Sbjct: 3267 D 3267
Score = 42.3 bits (95), Expect = 4e-04
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDID-NDPNRAPPCDSSQCV 514
C + C + CI R C+GE DCGDGSDE +SC + P D+ +C+
Sbjct: 2926 CTNNDFMCDNYRCISRLWRCDGEDDCGDGSDEPDSCPVRVCKPGTYQCADNRKCI 2980
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 466
C + C CI C+G+ DC DGSDE CD+
Sbjct: 2496 CPNHTFKCTSGHCIANSSVCDGDTDCADGSDEKDCDL 2532
Score = 41.5 bits (93), Expect = 6e-04
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDN-DPNRAPPCDSSQCVLPDCFCSEDGTVI 553
C + CI + C+G KDC DGSDE++C P+ +S+C+ C DGT
Sbjct: 95 CANGRCINKKWRCDGMKDCADGSDESTCGEGTCRPDEWHCIGTSRCIPLSRVC--DGTND 152
Query: 554 PGD 562
GD
Sbjct: 153 CGD 155
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDID-NDPNRAPPCDSSQCV 514
C C + CI + C+GE DCGD SDE ++C DP C + +C+
Sbjct: 47 CPPTKFLCANGMCIPKSAVCDGENDCGDMSDEPSNCSAHICDPKLEFQCANGRCI 101
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDN---DPNRAPPCDSSQCVLPDC 526
C AC C+ + C+G+ DC DGSDE+S + +P C++ +C+
Sbjct: 2168 CASSEFACESGQCVRKSFVCDGDNDCHDGSDESSLVCASWTCEPGHF-SCNNGRCINAKW 2226
Query: 527 FCSED 541
C +
Sbjct: 2227 VCDRE 2231
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 457
C AC + CI L C+G+ DCGD SDE +
Sbjct: 2370 CTGAQFACDNGRCISTRLLCDGDNDCGDNSDETT 2403
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/35 (42%), Positives = 17/35 (48%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C C + C R C+G DCGDGSDE C
Sbjct: 910 CSASMFRCANGQCKPRDWVCDGFDDCGDGSDEKGC 944
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Frame = +2
Query: 356 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAP-PCDSSQCVLPDCF 529
C G + CG CI C+G DCGDG DE + N + C S +CV
Sbjct: 2287 CVPGQVKCGSKNLCIPSSWLCDGSDDCGDGWDERQDCRERPCNVSEFRCTSGECVPASWR 2346
Query: 530 CSED 541
C D
Sbjct: 2347 CDGD 2350
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS--CDIDNDPNRAPPCDSSQCVLPDCF 529
C C CI R C+G+ DCGD SDE + C + +A +C+ +
Sbjct: 3046 CTADQFRCPSGRCISRDWLCDGDNDCGDSSDEKAGECHVTCPAGQARCATGRRCIPSEWR 3105
Query: 530 C 532
C
Sbjct: 3106 C 3106
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/72 (30%), Positives = 28/72 (38%)
Frame = +2
Query: 347 EPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDC 526
E C C + C+ C+GE DCGD SDE C C S +P
Sbjct: 2245 EVTCPAHEFTCPNGRCVSYDFLCDGEDDCGDFSDELRCPPTTCVPGQVKCGSKNLCIPSS 2304
Query: 527 FCSEDGTVIPGD 562
+ DG+ GD
Sbjct: 2305 WLC-DGSDDCGD 2315
Score = 38.7 bits (86), Expect = 0.004
Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +2
Query: 356 CQDGFLAC-GDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQ--CVLPDC 526
C +C S C+ C+GE DCGDGSDE+ + + RA CD +Q C C
Sbjct: 2414 CTQSEYSCRSTSRCVPLAFVCDGENDCGDGSDESE---EQNCERA-TCDVTQFRCKTGTC 2469
Query: 527 FCSE 538
E
Sbjct: 2470 ITRE 2473
Score = 36.3 bits (80), Expect = 0.023
Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Frame = +2
Query: 167 GEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTC---DWK-DAVKNCKLKNKERKIKPL 334
GE D C D+ S A C L F C W+ D +K+C + E
Sbjct: 68 GEND-CGDMSD-EPSNCSAHICDPKLEFQCANGRCINKKWRCDGMKDCADGSDESTCG-- 123
Query: 335 LYTEEPLCQ-DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQC 511
E C+ D + G S CI C+G DCGD DE S +D D + C S +C
Sbjct: 124 ----EGTCRPDEWHCIGTSRCIPLSRVCDGTNDCGDNYDEGSHCLDLDCKK-KNC-SQRC 177
Query: 512 V 514
V
Sbjct: 178 V 178
Score = 35.9 bits (79), Expect = 0.031
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +2
Query: 350 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDEN 454
P C G C + CI C+GE DC D SDE+
Sbjct: 823 PPCSAGKFTCKNGHCISLRWKCDGENDCVDNSDED 857
Score = 35.9 bits (79), Expect = 0.031
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Frame = +2
Query: 344 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDIDNDPNRAP--PCDSSQCV 514
E P C C C+ C+G+ DC D SDE C N CD+ +C+
Sbjct: 2325 ERP-CNVSEFRCTSGECVPASWRCDGDNDCTDKSDEPTDCQRSNATCTGAQFACDNGRCI 2383
Query: 515 LPDCFCSED 541
C D
Sbjct: 2384 STRLLCDGD 2392
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS--CDIDNDPNRAPPCDSSQCV 514
C C + C++R C+ DCGD SDE C N CD+++C+
Sbjct: 3246 CPQRLYQCINHVCVDRRWLCDDMDDCGDYSDELRLLCRYSICRNSHFRCDNNKCI 3300
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/81 (24%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = +2
Query: 362 DGFLACGDSTCIERGLFCNGEKDCGDGSDEN-SCDIDNDPNRAPPCDSSQCVLPD---CF 529
D + S CI + C+G DC D SDE C +D + C +P+ C
Sbjct: 1130 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLDQCHSNNGGCAQLCMDVPEGVQCS 1189
Query: 530 CSEDGTVIPGDLPARDVPQMI 592
C T+ + D+ + +
Sbjct: 1190 CRPGFTLASDNKTCEDINECL 1210
Score = 33.1 bits (72), Expect = 0.22
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +2
Query: 353 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP----CDSSQCVL 517
+C+ G C D+ CI C+G C G DE++C N+ P CD+ +CV
Sbjct: 2965 VCKPGTYQCADNRKCISVLEVCDGIPSCPAGDDESNC---GSVNQCAPYHFRCDNFRCVY 3021
Query: 518 PDCFC 532
C
Sbjct: 3022 RSRVC 3026
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 386 STCIERGLFCNGEKDCGDGSDENSC 460
S CI C+ + DCGD SDE +C
Sbjct: 1058 SRCIPLRFVCDADDDCGDRSDERNC 1082
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = +2
Query: 281 DAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
D V +C K+ E + C+ C + C+ C+ DCGD SDE C
Sbjct: 3307 DGVYHCTDKSDEAPYRSC--PARVACRKDQFKCLNRRCVPVRAVCDSNDDCGDISDELQC 3364
Query: 461 DIDN 472
N
Sbjct: 3365 PSTN 3368
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 353 LCQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 451
+C++ C ++ CI + C+G C D SDE
Sbjct: 3286 ICRNSHFRCDNNKCIPKWNVCDGVYHCTDKSDE 3318
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 51.6 bits (118), Expect = 6e-07
Identities = 21/62 (33%), Positives = 32/62 (51%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 535
C + C + C++RGL C+G+K C DGSDE C P+ C S +C+ C+
Sbjct: 183 CLEDEFGCENGQCVKRGLLCDGDKACLDGSDEKHCSC---PSNMFLCPSGECIPTTALCN 239
Query: 536 ED 541
+
Sbjct: 240 NE 241
Score = 39.1 bits (87), Expect = 0.003
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDN 472
C C CI CN E DC D +DE +C N
Sbjct: 219 CPSNMFLCPSGECIPTTALCNNENDCSDNADERNCQYAN 257
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 48.4 bits (110), Expect = 5e-06
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = +2
Query: 350 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
P+CQ G C +CI+ G C+ DCGD SDEN+C
Sbjct: 2091 PMCQYGQFRCARGSCIDTGRVCDFTDDCGDNSDENNC 2127
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/41 (43%), Positives = 22/41 (53%)
Frame = +2
Query: 350 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDN 472
P C G C D +CI + L C+ + DC DG DE SC N
Sbjct: 2244 PPCPFGLFRCTDGSCIMQSLRCDYQNDCSDGLDEASCGTCN 2284
Score = 41.1 bits (92), Expect = 8e-04
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +2
Query: 329 PLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
P T P C G C + CI C+ +KDC DGSDE +C
Sbjct: 2541 PPTSTPPPGCNSGEHRCSNGQCINAIQVCDFKKDCSDGSDEATC 2584
Score = 38.3 bits (85), Expect = 0.006
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 365 GFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
G++ C + CI++ C+ DCGD SDE C
Sbjct: 3207 GYVKCTNGGCIQKSKLCDFTDDCGDNSDEGRC 3238
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 353 LCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND 475
+C C +C C+ DCGD SDE SC N+
Sbjct: 3619 VCTRSQFRCTRGSCTSSDNVCDFSDDCGDSSDERSCSSYNN 3659
Score = 32.7 bits (71), Expect = 0.29
Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +2
Query: 284 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDC--GDGSDENS 457
AV + KL+N KPL T C C CI + C+ + DC D SDE+
Sbjct: 4041 AVDDVKLEN----CKPLDVTRP--CNTDEFKCSRGGCIPKSYLCDYQADCMFNDLSDESK 4094
Query: 458 CD 463
CD
Sbjct: 4095 CD 4096
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 371 LACGDSTCIERGLFCNGEKDCGDGSDENSC 460
+A G + CI C+ K+C DGSDE +C
Sbjct: 3855 VAEGPNACILSTQVCDFSKNCKDGSDEKNC 3884
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = +2
Query: 383 DSTCIERGLFCNGEKDCGDGSDENSC 460
D CI C+ DC DGSDE SC
Sbjct: 3435 DGKCIPLTSVCDFNVDCLDGSDERSC 3460
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 457
C C CI C+ E DC DGS+E +
Sbjct: 2783 CSSNQFRCDSGHCISSSSKCDFETDCCDGSEERN 2816
>SB_5319| Best HMM Match : Ldl_recept_a (HMM E-Value=7.56701e-44)
Length = 212
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 356 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPC-DSSQCVLPDCF 529
C+ AC + CI+R C+GE DCGD SDE C +++ N C ++S+C+
Sbjct: 114 CKPFEFACANGRHCIQRKWICDGENDCGDRSDEVDCGLESCGNDRWRCSNTSRCIAKSQV 173
Query: 530 CSEDGTV 550
C DG V
Sbjct: 174 C--DGRV 178
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 386 STCIERGLFCNGEKDCGDGSDENSC 460
S CI C+ + DCGD SDE +C
Sbjct: 85 SRCIPLRFVCDADDDCGDRSDERNC 109
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +2
Query: 362 DGFLACGDSTCIERGLFCNGEKDCGDGSDEN-SCDID 469
D + S CI + C+G DC D SDE C +D
Sbjct: 157 DRWRCSNTSRCIAKSQVCDGRVDCPDASDEGPGCGLD 193
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 46.4 bits (105), Expect = 2e-05
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C G +C + CI R C+ + DCGDGSDE +C
Sbjct: 50 CNSGQFSCSNGRCISRSWVCDRDNDCGDGSDERNC 84
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE-NSCDIDNDPNRAPPCDSSQCVLPDCFC 532
C C + CI C+G+ DCGD SDE SC + + C + +C+ C
Sbjct: 10 CPSNRFRCNNGRCIPMSWRCDGDNDCGDMSDEPPSCSGRSCNSGQFSCSNGRCISRSWVC 69
Query: 533 SED 541
D
Sbjct: 70 DRD 72
Score = 39.5 bits (88), Expect = 0.003
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDP 478
C+ +C + C+ L C+G DCGD SDE SC+ P
Sbjct: 103 CRSWEFSCLNGRCVFYRLVCDGVDDCGDSSDEMSCNATATP 143
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAP 490
C + C+ C+G+ DCGD SDE C P P
Sbjct: 156 CANRRCVYNSQRCDGQNDCGDWSDETGCSTPPIPTTCP 193
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 535
C + + CG+ C+ + C+ + DCGDG+DE +C C +C+L C
Sbjct: 667 CSENEITCGNGICVVKRWVCDQDDDCGDGTDELNCAPHTCRPNEFTCADKRCILSRWRCD 726
Query: 536 ED 541
D
Sbjct: 727 GD 728
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSS--QCVLPDC 526
C+ C D CI C+G++DC D SDE +C PN + C SS QC +C
Sbjct: 706 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 759
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 341 TEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC-DIDNDPNRAPPCDSSQCVL 517
++E + F CI C+GE DCGD SDE +C +P+ C + +C+
Sbjct: 582 SQEAFLNNEFTCVNTQKCIAATWKCDGEDDCGDNSDEINCPKATCNPDTQFRCTNGRCIP 641
Query: 518 PDCFCSED 541
C +D
Sbjct: 642 RRWVCDKD 649
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDE-NSCDIDNDPNRAPPCDSSQCVLPDCFCSED 541
C + CI R C+ + DC DGSDE NSC C + CV+ C +D
Sbjct: 634 CTNGRCIPRRWVCDKDDDCHDGSDERNSCATMTCSENEITCGNGICVVKRWVCDQD 689
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = +2
Query: 341 TEEP-LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDE-NSCDIDNDPNRAPPC 496
T+ P +C+DG CG S CI C+G DC + +DE ++C I+ + PC
Sbjct: 783 TKPPSICKDGEFQCGSSKQCIPESKVCDGSVDCTNSADEPDNCFINECKDNNGPC 837
Score = 37.5 bits (83), Expect = 0.010
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C+ C CI + C+GE DC + SDEN+C
Sbjct: 747 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDENNC 781
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 45.2 bits (102), Expect = 5e-05
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAP-PCDSSQCVLPDCFC 532
C C +S C+ C+GE DCGD SDE+ C + CD +C+ C
Sbjct: 343 CPPSDFTCANSQCVPNSFRCDGENDCGDRSDESGCKPTTTCSANEFRCDDGRCITSTFRC 402
Query: 533 SED 541
+
Sbjct: 403 DRE 405
Score = 44.8 bits (101), Expect = 7e-05
Identities = 39/143 (27%), Positives = 55/143 (38%), Gaps = 7/143 (4%)
Frame = +2
Query: 227 RCPAGLFFDIEKQTC-DWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIER 403
RC G F + C D D +NC+ + E +C DG + C+ R
Sbjct: 434 RCIPGRFRCDHRSDCLDGSDE-QNCQNVTRPTPPPVKCRKNERMCADG------NGCVHR 486
Query: 404 GLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVIPGD------L 565
C+GE+DC DGSDE C + C + +C+ C DGT GD
Sbjct: 487 RWICDGERDCLDGSDEAGCGTIGCSSDEFTCTNQKCIPLPQKC--DGTDNCGDGSDEKMC 544
Query: 566 PARDVPQMITITFDDAINNNNIE 634
P VP I + +N +
Sbjct: 545 PTPSVPPQPDIAYQPVSGDNTTQ 567
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP----CDSSQCVLPDCF 529
C + C+ + C+G DCGD SDE++C P PP C +SQCV P+ F
Sbjct: 308 CRNGRCVLKEWLCDGMDDCGDSSDEDNCP-TRPPYTCPPSDFTCANSQCV-PNSF 360
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/48 (33%), Positives = 21/48 (43%)
Frame = +2
Query: 341 TEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNR 484
T C C + CI+ C+G DC D SDE +C + P R
Sbjct: 125 TARMTCDPSQHTCNNGQCIKASWLCDGASDCQDNSDEMNCPLTLAPGR 172
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/74 (32%), Positives = 29/74 (39%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 535
C C + CI C+G +CGDGSDE C P + P P S
Sbjct: 510 CSSDEFTCTNQKCIPLPQKCDGTDNCGDGSDEKMC-----PTPSVPPQPDIAYQP---VS 561
Query: 536 EDGTVIPGDLPARD 577
D T PG + RD
Sbjct: 562 GDNTTQPGQVCPRD 575
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/60 (31%), Positives = 23/60 (38%)
Frame = +2
Query: 281 DAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
D +C ++ E KP C C D CI C+ E DC D SDE C
Sbjct: 363 DGENDCGDRSDESGCKPTT-----TCSANEFRCDDGRCITSTFRCDREFDCTDRSDERGC 417
Score = 31.1 bits (67), Expect = 0.88
Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +2
Query: 353 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDN 472
+C CG ST CI C+ C G DE +C N
Sbjct: 571 VCPRDHFRCGSSTICIANSKVCDATPHCPHGEDERNCATRN 611
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 16/41 (39%)
Frame = +2
Query: 368 FLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAP 490
F CI C+ DC DGSDE +C P P
Sbjct: 427 FTCAFSGRCIPGRFRCDHRSDCLDGSDEQNCQNVTRPTPPP 467
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +2
Query: 284 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKD-CGDGSDENSC 460
A+++ ++ ++ P++ C D C + C+ + CNG +D C DGSDE+ C
Sbjct: 635 AIRDIQITTEDCLCTPVIAEPGYKCLDHLFTCNNGECVTKTSRCNGMRDSCVDGSDESGC 694
Query: 461 DIDNDPNRAPPCDSSQCVLPDCFCSEDGTVIPGD 562
+ C S +C+ FC DG GD
Sbjct: 695 TCGLHEFQ---CSSGECIEVATFC--DGKKDCGD 723
Score = 44.4 bits (100), Expect = 9e-05
Identities = 16/28 (57%), Positives = 18/28 (64%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDENSC 460
C CIE FC+G+KDCGDG DE C
Sbjct: 703 CSSGECIEVATFCDGKKDCGDGFDETHC 730
>SB_10498| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-07)
Length = 106
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDI 466
C C D TCI+R CNG+ DC D SDE C +
Sbjct: 4 CPGSKYECRDGTCIDRNEHCNGKIDCPDASDEKGCGL 40
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 43.6 bits (98), Expect = 2e-04
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 362 DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 535
D L C + C ++ +C+G+ DC DGSDE +C +P P ++ C L + C+
Sbjct: 226 DKQLRCDNGRCEDKRWWCDGQDDCNDGSDEKNCSASANPT---PTNAQGCKLNNGGCA 280
>SB_29580| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-38)
Length = 130
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 353 LCQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPP 493
+C+D CG S CI + C+G+ DC G DE +C P PP
Sbjct: 42 VCRDDQFQCGTSRKCIRKSKICDGKSDCSGGEDEKNCVKPQTPPPTPP 89
Score = 43.2 bits (97), Expect = 2e-04
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +2
Query: 260 KQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGD-STCIERGLFCNGEKDCG 436
K C + KNC PL +P C+ C + S C++R C+G +DC
Sbjct: 66 KSDCSGGEDEKNCVKPQTPPPTPPL----KPKCRISQRRCDNGSGCVDRMKICDGMRDCA 121
Query: 437 DGSDENSC 460
DGSDE C
Sbjct: 122 DGSDERGC 129
Score = 35.5 bits (78), Expect = 0.041
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C C + CI R C+ E DC D SDE C
Sbjct: 4 CSATEFRCNNGRCITRAFRCDDEDDCLDNSDEQGC 38
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSS--QCVLPDC 526
C+ C D CI C+G++DC D SDE +C PN + C SS QC +C
Sbjct: 551 CRPNEFTCADKRCILSRWRCDGDRDCADNSDEINC-----PNSSQYCKSSEYQCSTGEC 604
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 457
C+ C CI + C+GE DC + SDE +
Sbjct: 592 CKSSEYQCSTGECIHKSWVCDGEFDCLNKSDETT 625
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +2
Query: 350 PLCQDGFLACG-DSTCIERGLFCNGEKDCGDGSDENSCDIDN-DPNRAPPCDSSQCVLPD 523
P C +G CG C+ + L CNG+ DC D SDE C I AP + VL D
Sbjct: 724 PGCGNGEFYCGVPGECVPQTLRCNGQMDCRDASDEQDCGIPTVTTTSAPQPTKGKTVLGD 783
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +2
Query: 353 LCQDGFLACG-----DSTCIERGLFCNGEKDCG-DGSDENSC 460
LC G+ CG + +CI + L CNG DC G DE+ C
Sbjct: 1529 LCPSGYFYCGTGPKGEISCITKALRCNGIYDCSVTGWDEDGC 1570
>SB_40871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 279
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND---PNRAPPCDSSQCVLPDC 526
C C + C+ R C+ + DCGDGSDE C+ CD+ +C+ +
Sbjct: 118 CSSSQFRCRNGRCVSRSWVCDKDNDCGDGSDEVQCNRAGGGWCGAGRYRCDNDRCIPRNW 177
Query: 527 FCSED 541
C D
Sbjct: 178 VCDRD 182
Score = 42.3 bits (95), Expect = 4e-04
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C G C + CI R C+ + DCGDGSDE C
Sbjct: 160 CGAGRYRCDNDRCIPRNWVCDRDNDCGDGSDETGC 194
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSED 541
C + I R C+GE DC DGSDE C + C + +CV C +D
Sbjct: 88 CSNGHLIYRHWRCDGENDCRDGSDETGCGSCSSSQFR--CRNGRCVSRSWVCDKD 140
>SB_35576| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1315
Score = 41.1 bits (92), Expect = 8e-04
Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 535
C AC CI+ C+G DC D SDE+ CD + C S CV C
Sbjct: 1155 CLSSKFACESGECIDVVGLCDGTDDCKDASDESRCDHKCSKDEY-QCVSGACVKWPLTCD 1213
Query: 536 -----EDGTVIPG 559
EDGT PG
Sbjct: 1214 GKKDCEDGTDEPG 1226
Score = 35.5 bits (78), Expect = 0.041
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGT 547
C + C+ R L C+G+ C D SDE +C + C+S +C+ C DGT
Sbjct: 1126 CVNGQCVSRDLICDGDNACLDFSDEANCKCLSSKF---ACESGECIDVVGLC--DGT 1177
>SB_21487| Best HMM Match : MAM (HMM E-Value=0)
Length = 874
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +2
Query: 344 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNR 484
E C C CI L C+ KDC DGSDE +C + DP R
Sbjct: 700 ENVSCTPESYKCRSGECISLDLLCDFNKDCLDGSDEENCGV-QDPGR 745
Score = 32.7 bits (71), Expect = 0.29
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = +2
Query: 392 CIERGLFCNGEKDCGDGSDENSC 460
CI G C+ DCGDG DE C
Sbjct: 497 CISHGQLCDFVDDCGDGWDETGC 519
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +2
Query: 332 LLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
LL+ C G C S CI L C+G +DC D SDE +C
Sbjct: 15 LLFRVVGCCDPGQFECTSSECIPDVLKCDGSEDCADSSDEINC 57
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 341 TEEPLCQ-DGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
T+ +C+ D F + CI C+G DC G+DE C
Sbjct: 58 TKRSMCRVDQFECLIEGDCIPLSKHCDGTWDCQHGTDEMDC 98
>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
Length = 291
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND---PNRAPPCDSSQCVLPDC 526
C C + CI R C+ + DCGDGSDE +C N CD+ +C+ +
Sbjct: 134 CGSTQFRCRNGNCINRNYVCDKDNDCGDGSDEVACSRLNGGWCGAGQYRCDNDRCIPLNW 193
Query: 527 FC 532
C
Sbjct: 194 VC 195
Score = 37.5 bits (83), Expect = 0.010
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSED 541
C + C+ R C+G DC DG+DE C C + C+ + C +D
Sbjct: 104 CNNGHCVHRNWKCDGSNDCRDGTDEVGCGKCGSTQFR--CRNGNCINRNYVCDKD 156
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C G C + CI C+ DC D SDE+ C
Sbjct: 176 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 210
>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
Length = 157
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDENSCDIDND---PNRAPPCDSSQCVLPDCFC 532
C + CI R C+ + DCGDGSDE +C N CD+ +C+ + C
Sbjct: 7 CRNGNCINRNYVCDKDNDCGDGSDEVACSRLNGGWCGAGQYRCDNDRCIPLNWVC 61
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C G C + CI C+ DC D SDE+ C
Sbjct: 42 CGAGQYRCDNDRCIPLNWVCDRLNDCHDNSDESGC 76
>SB_50657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C+ G C + CI L C+ + DCGD SDE C
Sbjct: 5 CKAGDFRCANGRCISGALVCDLDDDCGDESDERGC 39
>SB_45605| Best HMM Match : MAM (HMM E-Value=2.1e-16)
Length = 187
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C C +S C++R CN + DCGD SDE C
Sbjct: 145 CLASQYVCANSKCVDRDQLCNFKDDCGDNSDELPC 179
>SB_13199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 39.9 bits (89), Expect = 0.002
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDENSCD 463
C + C+ R C+G+ DC DGSDE +C+
Sbjct: 28 CENKLCVPRTWLCDGDNDCHDGSDEKNCE 56
Score = 36.3 bits (80), Expect = 0.023
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDEN 454
CG+STCI + C+G DC D SDE+
Sbjct: 72 CGNSTCIPLTVLCDGLYDCADRSDES 97
>SB_58974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1831
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 125 CKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKDAVKNCK 301
CK+K G + + +C QC A + RCPAGL + ++K CDW V +
Sbjct: 1238 CKEKPNGHY-----ADPRDCSRFYQCDAFHRAFLHRCPAGLKWSVKKTACDWPRYVDCDR 1292
Query: 302 LKNKERKIKPLLYTEEPLC 358
+ PL T +P C
Sbjct: 1293 TTSTPPTPTPLTPTTKPAC 1311
Score = 37.9 bits (84), Expect = 0.008
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 110 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDW 277
++ CKDK G + + +C QC A + RCPAGL + ++K TCDW
Sbjct: 988 VDTTFCKDKPNGHY-----ADPMDCSRFYQCDAFHRAFLHRCPAGLKWSVKKTTCDW 1039
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 110 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDW 277
++ CKDK G + + +C QC A + RCPAGL + ++K CDW
Sbjct: 883 VDTTFCKDKPNGHY-----ADPRDCSKFYQCDAFHRAFLHRCPAGLKWSVKKTACDW 934
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +2
Query: 110 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDW 277
++ CKDK G + + +C QC A + RCPAGL + ++K CDW
Sbjct: 1133 VDTTFCKDKPNGHY-----ADPRDCSRFYQCDAFHKTFLHRCPAGLKWSVKKTACDW 1184
Score = 32.7 bits (71), Expect = 0.29
Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 1/84 (1%)
Frame = +2
Query: 110 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKDA 286
++ CKDK G + + +C QC A + RC GL + I K TCDW
Sbjct: 778 VDTTFCKDKPNGYY-----ADPRDCSRFYQCDAFHRAFLHRCSPGLKWSITKTTCDWPRN 832
Query: 287 VKNCKLKNKERKIKPLLYTEEPLC 358
V + P T +P C
Sbjct: 833 VDCDRKTPTPPSPTPPTTTPKPAC 856
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 110 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCD 274
++ CKD+ G + + +C QC AS + RCP GL + ++K CD
Sbjct: 1338 VDTTFCKDRPHGHY-----ADPRDCSRFYQCDASHKTFLHRCPDGLKWSVKKTACD 1388
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +2
Query: 179 NCRDVIQCTASGIQAI-RCPAGLFFDIEKQTCDWKDAV 289
+C C S + RCP GL + + K+TCD+ V
Sbjct: 581 DCAQFYFCYGSAESLLSRCPRGLLWSVVKKTCDYPHLV 618
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 110 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCD 274
++ CKDK + + + NC + QC ++ CP GL ++IEK CD
Sbjct: 1449 VDTSFCKDKTSDYYH-----DPRNCSRLYQCDIFHRAFLKSCPHGLKWNIEKNACD 1499
>SB_55149| Best HMM Match : Ldl_recept_a (HMM E-Value=2.6e-23)
Length = 190
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/64 (32%), Positives = 28/64 (43%)
Frame = +2
Query: 368 FLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGT 547
F D CI + C+GE DC D SDE C ++ C ++QCV C +
Sbjct: 95 FKCVSDGKCIPKSWRCDGEMDCPDSSDEEGCVNRTCSSKEFNC-NNQCVPLSWKCDGEKD 153
Query: 548 VIPG 559
PG
Sbjct: 154 CRPG 157
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 38.3 bits (85), Expect = 0.006
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +2
Query: 344 EEPLCQDGFLACGD--STCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVL 517
E C+ +++C + CI + C+G DC D SDE C + N+ CD+ QC+
Sbjct: 1303 EPSTCKPNYISCASMKAICIPKMWRCDGMLDCTDKSDEEDCPPCKE-NQF-RCDNGQCID 1360
Query: 518 PDCFCSE 538
D C +
Sbjct: 1361 GDPRCDK 1367
Score = 38.3 bits (85), Expect = 0.006
Identities = 15/36 (41%), Positives = 17/36 (47%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 463
C+ F C CI C+ DCGD SDE CD
Sbjct: 1383 CEPNFFRCNTGKCISARWQCDQLDDCGDNSDEIGCD 1418
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 350 PLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCF 529
P C++ C + CI+ C+ K+C DGSDE C +PN C++ +C+
Sbjct: 1344 PPCKENQFRCDNGQCIDGDPRCDKYKNCTDGSDELGC-ATCEPNFF-RCNTGKCISARWQ 1401
Query: 530 CSE 538
C +
Sbjct: 1402 CDQ 1404
>SB_33423| Best HMM Match : Ldl_recept_a (HMM E-Value=7.8e-22)
Length = 133
Score = 37.5 bits (83), Expect = 0.010
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 356 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDIDN 472
C +G AC + C+ + C+ DC DGSDE +C I +
Sbjct: 88 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPISS 127
>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 37.1 bits (82), Expect = 0.013
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = +2
Query: 335 LYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
L + E C C + CI+ CN +DC DGSDE SC
Sbjct: 385 LVSSEGPCGPKKFTCQNRQCIDDFKQCNNRQDCRDGSDEISC 426
>SB_31087| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-32)
Length = 1039
Score = 37.1 bits (82), Expect = 0.013
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 356 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSCDI 466
C +G AC + C+ + C+ DC DGSDE +C I
Sbjct: 901 CAEGQFACEKTNKCLAKSSLCDTVHDCDDGSDEKNCPI 938
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = +2
Query: 281 DAVKNCKLKNKERKIKPLLYTEEPLC-QDGFLACGDSTCIERGLFCNGEKDCGDGSDENS 457
D V +C + E+ EE C D F + C+ C+ DC D DE++
Sbjct: 922 DTVHDCDDGSDEKNCPISRRDEEFGCGSDKFTCDNGAKCLPLTWLCDSITDCMDSKDEHN 981
Query: 458 C 460
C
Sbjct: 982 C 982
>SB_12083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1671
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 125 CKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCK 301
C++K G++ + NC I C+ CP L FD +K C+W + V NCK
Sbjct: 597 CEEKKNGDY-----ADPSNCNGFITCSNGYAYKRDCPFNLKFDTKKLECEWPNKV-NCK 649
Score = 36.3 bits (80), Expect = 0.023
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 170 EGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAV 289
+ +NC + C+ I + CP+ L +D K C+W D V
Sbjct: 528 DANNCNGFVMCSNGYIYYMDCPSNLRYDPAKGRCEWADTV 567
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +2
Query: 110 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDWKDA 286
++ C ++ G + + NC I C+ A R CP GL F+ CD+
Sbjct: 311 VDSNFCTERQDGNY-----ADSSNCNLYITCSNGFTIANRHCPTGLAFNEAIGMCDYPSN 365
Query: 287 VKNC 298
V C
Sbjct: 366 VPGC 369
>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
Length = 1724
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 392 CIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTV 550
C+ R L C+G+ DC D SDE C + NR + C + D FC +
Sbjct: 1356 CLNRTLQCDGKPDCSDYSDEAHCRVRKSINR-----NVVCKVGDWFCGNKSDI 1403
Score = 36.3 bits (80), Expect = 0.023
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = +2
Query: 356 CQDGFLACG-DSTCIERGLFCNGEKDCGDGSDENSC 460
CQ C D CI C+GE DC DG DE C
Sbjct: 338 CQSNEFYCSKDDRCINIFWKCDGESDCTDGEDEQGC 373
Score = 34.7 bits (76), Expect = 0.071
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 356 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSC 460
C D C S CI+ C+G DC D SDE+ C
Sbjct: 1303 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 1338
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 356 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDEN 454
C + C +S C+++ C+ DCGDG+DE+
Sbjct: 120 CTANEVRCKNSGHCVQQQQVCDFTDDCGDGTDED 153
>SB_26126| Best HMM Match : Ldl_recept_b (HMM E-Value=3e-24)
Length = 652
Score = 36.7 bits (81), Expect = 0.018
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +2
Query: 350 PLCQDGFLACGDS-TCIERGLFCNGEKDCGDGSDEN-SCDIDNDPNRAPPCDSSQC 511
P C G C + CI C+G +DC DG DE C+ID + C S +C
Sbjct: 209 PPCMPGEFKCQSTGRCIPESKVCDGTRDCQDGEDEPLRCNIDECKDHNGHC-SQKC 263
>SB_43556| Best HMM Match : Ldl_recept_a (HMM E-Value=2.7e-11)
Length = 65
Score = 36.3 bits (80), Expect = 0.023
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 362 DGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPN 481
D C + CI C+ E DCGD SDE +C ++ N
Sbjct: 9 DTSFKCDNGRCISATWVCDTENDCGDNSDEMNCSKYDNKN 48
>SB_43832| Best HMM Match : CBM_14 (HMM E-Value=2.8e-16)
Length = 518
Score = 35.9 bits (79), Expect = 0.031
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 161 VAGEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAVK 292
+ E +NC + C CP GL F+ + CDW VK
Sbjct: 465 IYAEKENCYGFVLCGGGIAHKKTCPPGLIFNTDLMVCDWSHEVK 508
>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 35.5 bits (78), Expect = 0.041
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +2
Query: 344 EEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDND 475
+ P + C CI C+G+ DCGD SDE SC ND
Sbjct: 355 DAPCKISSWFKCRSGVCIPPQWICDGKDDCGDRSDE-SCSWIND 397
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 392 CIERGLFCNGEKDCGDGSDENSCDIDNDPNR 484
CI+ C+G+ +C D SDEN C +P+R
Sbjct: 285 CIDISYKCDGKPECADHSDENDCPPLINPDR 315
>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
Length = 2282
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCS 535
C L C C++ C+G +DC G DE C D N C S C+ C+
Sbjct: 245 CFTNELTCSSGRCVQSINLCDGVRDCEYGLDELRCG-DGCKNSEFLCPDSTCIPWSSTCN 303
Query: 536 E 538
+
Sbjct: 304 Q 304
Score = 31.9 bits (69), Expect = 0.50
Identities = 19/77 (24%), Positives = 30/77 (38%)
Frame = +2
Query: 284 AVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCD 463
A+ + + ++ PL C C CI C+G+ +C D SDE+ C
Sbjct: 185 AIDDIMITTEKCATSPLYAAPGYKCAPYEFQCTSGHCISGSSRCDGDYNCMDRSDEDGCK 244
Query: 464 IDNDPNRAPPCDSSQCV 514
+ C S +CV
Sbjct: 245 CFTN---ELTCSSGRCV 258
>SB_13694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 35.5 bits (78), Expect = 0.041
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +2
Query: 110 LEQELCKDKDAGEWFRLVAGEGDNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDWKDAV 289
+ + CK K GE+ D CR I C CP GL ++ + + CDW V
Sbjct: 71 IHDDFCKYKPDGEY----RDPYDACRGFIHCHNYNASYKPCPGGLLYNEKTKQCDWPRNV 126
Query: 290 KNCKLKN 310
+C + N
Sbjct: 127 -DCPMGN 132
>SB_18810| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 34.7 bits (76), Expect = 0.071
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +2
Query: 356 CQDGFLACGDST-CIERGLFCNGEKDCGDGSDENSC 460
C D C S CI+ C+G DC D SDE+ C
Sbjct: 6 CNDDQFQCRASKICIKSSFVCDGVPDCNDHSDEDDC 41
Score = 32.3 bits (70), Expect = 0.38
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 392 CIERGLFCNGEKDCGDGSDENSC 460
C+ R L C+G+ DC D SDE C
Sbjct: 59 CLNRTLQCDGKPDCSDYSDEAHC 81
>SB_3253| Best HMM Match : Ldl_recept_a (HMM E-Value=0.00064)
Length = 48
Score = 34.3 bits (75), Expect = 0.094
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Frame = +2
Query: 353 LCQDGFLACG-----DSTCIERGLFCNGEKDCG-DGSDENSC 460
LC G+ CG + +CI + L CNG DC G DE+ C
Sbjct: 6 LCPSGYFYCGTGPKGEISCINKALRCNGIYDCSVTGWDEDGC 47
>SB_58073| Best HMM Match : CBM_14 (HMM E-Value=1.4e-17)
Length = 225
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 176 DNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDW 277
D C+ I C+ + CPAGL ++ EK+ CDW
Sbjct: 98 DFCKMYIACSNGIAYEMPCPAGLNWNDEKKYCDW 131
>SB_1784| Best HMM Match : CBM_14 (HMM E-Value=7e-18)
Length = 123
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 176 DNCRDVIQCTASGIQAIRCPAGLFFDIEKQTCDW 277
+NC+ I C+ +CPAGL ++ K+ CDW
Sbjct: 74 ENCKMYITCSNKITYERQCPAGLNWNDAKKWCDW 107
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKD----CGDGSDENSCDIDNDPNRAPPCDSSQCVL 517
C+ C + CI + C G CDI DP + PC QCVL
Sbjct: 991 CEHAMNTCYSNPCIHGNCLVRDDSSFECICHKGFTGTKCDIRVDPCASSPCAHGQCVL 1048
>SB_27121| Best HMM Match : CBM_14 (HMM E-Value=5.8e-29)
Length = 339
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 179 NCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDW 277
NC QC A + CP+GL + + K TCDW
Sbjct: 128 NCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDW 161
>SB_27119| Best HMM Match : CBM_14 (HMM E-Value=4.1e-15)
Length = 220
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 179 NCRDVIQCTASGIQAIR-CPAGLFFDIEKQTCDW 277
NC QC A + CP+GL + + K TCDW
Sbjct: 35 NCSRFYQCDAFHKAFLHSCPSGLKWSVTKTTCDW 68
>SB_22727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C L C C+ C+G KDC G DE C
Sbjct: 311 CFTNELTCSSGRCVPSINLCDGVKDCEQGLDELRC 345
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCV 514
C C CI C+ + +C D SDE+ C + C S +CV
Sbjct: 275 CASYEFQCTSGHCISGSSRCDSDYNCMDSSDEDGCKCFTN---ELTCSSGRCV 324
>SB_20531| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 31.5 bits (68), Expect = 0.67
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDE 451
C + C C+ C+G DC D SDE
Sbjct: 216 CSEEEFPCASGDCVPLTSVCDGSADCSDSSDE 247
>SB_17635| Best HMM Match : CUB (HMM E-Value=0)
Length = 630
Score = 31.5 bits (68), Expect = 0.67
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSDENSC 460
C + I+ C+G DCGD SDE++C
Sbjct: 424 CDNDNYIQCQWKCDGTDDCGDHSDEDNC 451
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C L C C+ C+G KDC G DE C
Sbjct: 1140 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 1174
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCV 514
C C CI C+ + +C D SDE+ C + C S +CV
Sbjct: 1104 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGCKCFTN---ELTCSSGRCV 1153
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 31.5 bits (68), Expect = 0.67
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C L C C+ C+G KDC G DE C
Sbjct: 230 CFTNELTCSSGRCVPSINLCDGVKDCEHGLDELRC 264
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCV 514
C C CI C+ + +C D SDE+ C + C S +CV
Sbjct: 194 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGCKCFTN---ELTCSSGRCV 243
>SB_52147| Best HMM Match : EGF (HMM E-Value=0)
Length = 364
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 377 CGDSTCIER--GLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCV 514
C D TCI++ +C +C G SCD D ++ PC+ C+
Sbjct: 142 CNDGTCIQQTGSFYC----ECLAGYTGQSCDTMIDACQSNPCNDGTCI 185
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 377 CGDSTCIER--GLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPD 523
C D TCI++ +C +C G SCD D ++ PC C+ PD
Sbjct: 179 CNDGTCIQQTGSFYC----ECLTGYTGQSCDTMIDACQSNPCVHGTCI-PD 224
>SB_16878| Best HMM Match : Keratin_B2 (HMM E-Value=0.19)
Length = 413
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +2
Query: 389 TCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVL-PDC 526
T I R +C+ + C GS N +N +P CD C + DC
Sbjct: 18 TKIVRAEYCSSDFSCNYGSGRNRICCNNHCTYSPTCDGYSCSMDSDC 64
>SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 416 NGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPD-CFCSEDGTVIPGDLPARDVPQMI 592
N +KD GSD N+ D DN N D C D C S++ GD R ++
Sbjct: 67 NNDKD--GGSDNNNDDDDNSDNNH---DDGGCGYDDNCGSSDNDNCCSGDYERRHNNYLV 121
Query: 593 TITFD 607
+ FD
Sbjct: 122 VMNFD 126
>SB_34641| Best HMM Match : Mucin (HMM E-Value=4.3)
Length = 199
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 81 LTRQQR--KMKAWNKNYARTRTPANGSGWW 164
L+RQ+R K KAW ART P G+ +W
Sbjct: 40 LSRQRRDTKHKAWTTRSARTWVPVTGTPYW 69
>SB_33807| Best HMM Match : RNA_pol (HMM E-Value=2.7e-10)
Length = 469
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Frame = +2
Query: 377 CGDSTCIERGLFCNGEKDCGDGSD---ENSCDIDNDPNRAPPCD 499
C D + G C+G C G D ++SCD+ D + CD
Sbjct: 412 CDDDDSCDVGKDCDGYDSCDVGEDCEGDDSCDVGEDCDGNDSCD 455
>SB_41869| Best HMM Match : Laminin_EGF (HMM E-Value=9.7e-23)
Length = 198
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +2
Query: 338 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPC 496
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 2 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNNVQGPEC 58
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +2
Query: 338 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPC 496
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 70 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNYVQGPEC 126
>SB_32607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +2
Query: 416 NGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDG-TVIPGDLPARDVPQMI 592
N +KD DGSD N+ D DN N D C D S D GD R ++
Sbjct: 67 NNDKD--DGSDNNNDDDDNSDNNH---DDGGCGYDDNGGSSDNDNCCSGDYERRHDNYLV 121
Query: 593 TITFDDAI 616
+ FD I
Sbjct: 122 VMNFDGKI 129
>SB_28040| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 391
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/53 (28%), Positives = 21/53 (39%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSCDIDNDPNRAPPCDSSQCV 514
C C CI C+ + +C D SDE+ C + C S +CV
Sbjct: 231 CASYEFQCASGHCISGSSRCDSDYNCMDRSDEDGCKCFTN---ELTCSSGRCV 280
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +2
Query: 356 CQDGFLACGDSTCIERGLFCNGEKDCGDGSDENSC 460
C L C C+ C+G KDC DE C
Sbjct: 267 CFTNELTCSSGRCVPSINLCDGVKDCEQDLDELRC 301
>SB_22922| Best HMM Match : DUF1599 (HMM E-Value=4.2)
Length = 119
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 422 EKDCGDGSDENSCDIDNDPNRAPPCDSSQCVLP 520
E+D D D+ CD +NDP S+ VLP
Sbjct: 32 ERDLRDEDDDEMCDRENDPRNLRRQSSTDNVLP 64
>SB_16967| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1706
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +2
Query: 338 YTEEPLCQDGFLACGDSTCIERGLFCNGE----KDCGDGSDENSCDIDNDPNRAPPC 496
YT +P+ F C +C +R FC+ E DC G+ C++ + + P C
Sbjct: 992 YTRQPMGGTPFDRCVLCSCNDRSRFCHPETGVCTDCKIGTHGYRCELCTNNVQGPEC 1048
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 416 NGEKDC-GDGSDENSCDIDNDPNRAPPCDSSQCV 514
NG KDC GD +E C+ D P + PC V
Sbjct: 472 NGGKDCVGDAKEEKDCNTDKCPPK--PCSPEDIV 503
>SB_54415| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 612
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 416 NGEKDC-GDGSDENSCDIDNDPNRAPPCDSSQCV 514
NG KDC GD +E C+ D P + PC V
Sbjct: 134 NGGKDCVGDAKEEKDCNTDKCPPK--PCSPEDIV 165
>SB_32130| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 446
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 416 NGEKDC-GDGSDENSCDIDNDPNRAPPCDSSQCV 514
NG KDC GD +E C+ D P + PC V
Sbjct: 387 NGGKDCVGDAKEEKDCNTDKCPPK--PCSPEDIV 418
>SB_14947| Best HMM Match : TSP_1 (HMM E-Value=6.8e-21)
Length = 666
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 416 NGEKDC-GDGSDENSCDIDNDPNRAPPCDSSQCV 514
NG KDC GD +E C+ D P + PC V
Sbjct: 119 NGGKDCVGDAKEEKDCNTDKCPPK--PCSPEDIV 150
>SB_8486| Best HMM Match : Granulin (HMM E-Value=0)
Length = 878
Score = 29.1 bits (62), Expect = 3.6
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 3/122 (2%)
Frame = +2
Query: 200 CTASGIQAIRCPAGLFFDIEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPLCQDGFLAC 379
C G+ CP G D TC+ D+V K +++K + +C DG C
Sbjct: 303 CCDDGVHC--CPNGYTCDTASGTCNKGDSVLPLFKKTPAKQLKNV------VCPDGTSQC 354
Query: 380 GD-STCIERGLFCNGEKDCGDGSDENSCD--IDNDPNRAPPCDSSQCVLPDCFCSEDGTV 550
D +TC + +G+ C + CD + PN C+SS CSE +V
Sbjct: 355 PDGNTCCK---LSSGQYGCCPLPNAVCCDDGVHCCPN-GYTCNSSSGT-----CSEGDSV 405
Query: 551 IP 556
+P
Sbjct: 406 LP 407
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +2
Query: 416 NGEKDC-GDGSDENSCDIDNDPNRAPPCDSSQCV 514
NG KDC GD +E C+ D P + PC V
Sbjct: 503 NGGKDCVGDAKEEKDCNTDKCPPK--PCSPEDIV 534
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 7/98 (7%)
Frame = +2
Query: 281 DAVKNCKLKNKERKIKPLLYTEEPLCQDGFLACGDSTCIERGLFCNGEKDCGDGSD---- 448
+ +K K RK+ L + + + D+ C +R ++C K G SD
Sbjct: 1202 ETLKPLNGKKPYRKLSLLDAQQANIMYNNCKKGSDAVCADRNMYCPQYKQWGRCSDSWTR 1261
Query: 449 ---ENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVI 553
+ SCD+ A SS+C + +C+ + VI
Sbjct: 1262 QNCQKSCDLCPQQQDACRDYSSRCAIYRRYCNSNRWVI 1299
>SB_24771| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1387
Score = 28.3 bits (60), Expect = 6.2
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -2
Query: 385 VAASEEAILTEWFFSVQERLYFTLLVLELTIFHSIFPIAGLFLNIEEQTGRATYSLYSR- 209
V + +LT F SV F L ++ L I P+A EEQ G TY L +R
Sbjct: 1264 VEKKRKNVLTAMFVSVW--FIFGLFLMLLEFSQIISPLAWDRTRSEEQNGNHTYGLPNRY 1321
Query: 208 GST 200
GST
Sbjct: 1322 GST 1324
>SB_55039| Best HMM Match : MFS_1 (HMM E-Value=5.3)
Length = 509
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 431 CGDGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVIPGDL 565
C DG D+ CD DND + CD C +DG + G+L
Sbjct: 287 CDDGGDDGGCD-DNDGD-GSGCDDGG---DSSGCDDDGEQLAGNL 326
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 437 DGSDENSCDIDNDPNRAPPCDSSQCVLPDCFCSEDGTVIPG 559
DG D++SCD D + D + V D C + G V G
Sbjct: 402 DGGDDSSCDDDGGDDSGCYDDGNGSVFDDEGCDDSGCVNDG 442
>SB_25743| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = -1
Query: 563 SRRGSLCRPRSRSSQEGHTARNRMAELYLGRCQYHKNFHQIHRHSPFRRYRKDRVQ 396
++ G R R++ +Q GH R ++ G +N H H P R KD Q
Sbjct: 40 TQHGHTTRTRNKDTQHGHPTRTCNKDMQQGHATRTRNKDTQHGH-PTRTCNKDMQQ 94
>SB_21439| Best HMM Match : LicD (HMM E-Value=4.5e-08)
Length = 362
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 230 CPAGLFFDIEKQTCDWKDA 286
CP+ L+ DIE TC+W++A
Sbjct: 122 CPS-LYIDIEGSTCEWRNA 139
>SB_3455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 587
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = -1
Query: 464 YHKNFHQIHRHSPFRRYRKDRVQCK*SRRKRGSHLDRVV 348
+H NF + P R+++K+ Q S+ +GS ++R++
Sbjct: 179 HHTNFTTVVNFPPTRKHKKNTTQLNHSKPDKGSIVERLL 217
>SB_9843| Best HMM Match : LIM (HMM E-Value=8.4e-07)
Length = 2128
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 156 GWWPARATTVATSSNVLPREYKLY-VARPVCSSILRNRPA 272
G+ P T+ A +++P+ L+ V+RP+ SIL+N PA
Sbjct: 794 GYSPKNDTSTAQPVSLIPKHEPLHDVSRPI-RSILKNEPA 832
>SB_8216| Best HMM Match : Metallothio_2 (HMM E-Value=0.71)
Length = 628
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 6/92 (6%)
Frame = +2
Query: 254 IEKQTCDWKDAVKNCKLKNKERKIKPLLYTEEPL--CQDG-FLACGDSTCIERGLFCNGE 424
+E+ + +A + +L+ +++++K +E C D + D I++ + NG
Sbjct: 330 LEQVVEEISEAERAKELRREQKRLKKKAKRKEKFKCCPDAEIIEIKDKDPIQKHMCSNGS 389
Query: 425 KDCGDGSDENSCDIDNDPNRAP---PCDSSQC 511
+ +G E SC+ ++D + C+ QC
Sbjct: 390 TEDIEGGHEGSCEEEDDGDSIDTPCSCEDMQC 421
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,685,504
Number of Sequences: 59808
Number of extensions: 484213
Number of successful extensions: 2566
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 2066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2533
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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