Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0155
(371 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 114 4e-27
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr... 29 0.18
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 29 0.31
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 28 0.41
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 1.6
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 26 1.6
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ... 26 2.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 2.2
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 2.9
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 2.9
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M... 25 2.9
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 2.9
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 5.0
SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein Usp106|Sch... 25 5.0
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 24 6.7
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop... 24 6.7
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 24 6.7
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 24 8.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 24 8.8
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 24 8.8
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 114 bits (275), Expect = 4e-27
Identities = 55/92 (59%), Positives = 70/92 (76%)
Frame = +3
Query: 48 NKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLK 227
N D S +D +TAILR+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++K
Sbjct: 21 NPPKDTYSAEDTATAILRKKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVK 80
Query: 228 GKRRKETVCIVLSDDNCPDEKIRMNRVVRNNL 323
GKRRK+TV IVL+D+ D R+NRVVRNNL
Sbjct: 81 GKRRKDTVLIVLTDEEMEDGVARINRVVRNNL 112
Score = 27.1 bits (57), Expect = 0.94
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +1
Query: 325 RVRLSDVVSIAPCP 366
RVRL D+V+I PCP
Sbjct: 113 RVRLGDIVTINPCP 126
>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 382
Score = 29.5 bits (63), Expect = 0.18
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = +1
Query: 22 FLDSNNKF*IKWQIIKALMIYRPRSSVARTDPTVS--LSKKQSAMTTQSWHFHRPKWSNF 195
F+++N K KW++ A+ P S + + PT+S + + SA TT +RP S
Sbjct: 286 FIEANIK---KWRLAPAVGSLAPPPSYSTSQPTISWDAASESSAGTTTQGDTNRPDKSKN 342
Query: 196 NSSVVTQSCSRANAARKPFASCS 264
S + + +AA F+ S
Sbjct: 343 RSPPINFDGTSYDAAGNVFSPSS 365
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 28.7 bits (61), Expect = 0.31
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 69 SPDDLSTAILRRKDRPNRLIVEEAVSDDNS--VVALSQAKMEQLQLFRGDTVLLKGKRRK 242
S +D+S + RR R + + A S D++ V A S +L G+T+ K
Sbjct: 243 STEDMSFMLERRLQGHQRWVWDCAFSADSTYLVTASSDHVARLWELSSGETIRQYSGHHK 302
Query: 243 ETVCIVLSD 269
VC+ L+D
Sbjct: 303 AAVCVALND 311
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 28.3 bits (60), Expect = 0.41
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 73 LMIYRPRSSVARTDPTVSLSKKQSAMTTQSWH-FHRPKW 186
L + R + DP ++ + Q + T+SWH FH +W
Sbjct: 259 LALIRGCDGLLSDDPVMARALSQGPIVTKSWHYFHYSEW 297
>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 452
Score = 26.2 bits (55), Expect = 1.6
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +1
Query: 94 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANA 237
SSV S S ++M++ + +F+ S+ +SSV T + S +N+
Sbjct: 329 SSVVIVQSETSCSINSASMSSNTTYFYWNSTSSLSSSVFTNTTSSSNS 376
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.2 bits (55), Expect = 1.6
Identities = 16/64 (25%), Positives = 27/64 (42%)
Frame = +3
Query: 129 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDEKIRMNRV 308
++ + S D V E+ + GD + E C V+ DD+ P E+ + N +
Sbjct: 127 LDNSTSPDEYVYVSLVQNPERFTGYAGDHSAAIWRSIYEQNCFVVDDDDNPSEQPKSNAL 186
Query: 309 VRNN 320
R N
Sbjct: 187 FRPN 190
>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 409
Score = 25.8 bits (54), Expect = 2.2
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +3
Query: 72 PD-DLSTAILRRKDRPNRLIVEEAVSD 149
PD D + + + RK+ PNRL++ A+S+
Sbjct: 233 PDADANISKIARKEDPNRLVLASAISE 259
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 2.2
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = +3
Query: 45 LNKMADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLF 203
L +A N + L+T +RK + N ++ +A ++ N+ +++ A E+ QL+
Sbjct: 768 LGSLAGNLPQESLTTKS-KRKSKVNLELMFDATAEKNNENSMNSAVFEKSQLY 819
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 2.9
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 132 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 245
E+AV D+N+ ++L+ + + RGD ++ G ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 2.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 363 TRSDGYHIRKTHTKGCFSQHGSSEF 289
T SD Y + T+T G Q+G S++
Sbjct: 48 TMSDSYALSSTYTAGSSYQNGESDY 72
>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 556
Score = 25.4 bits (53), Expect = 2.9
Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 87 TAILRRKDRPNRLIVEEA--VSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIV 260
++ L +++ +++ EA +S+DN K+E +LF DT G + + I+
Sbjct: 22 SSFLDKENETFDVMMNEAPELSEDNDAQEDELEKLEDAELFMFDTGSADGAKDSVPLDII 81
Query: 261 LSDDNCPDEKIRMNRV 308
D+ +++ N +
Sbjct: 82 AGDNTVKEDEEASNEI 97
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 2.9
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 126 IVEEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVC 254
+ +E SD++ ++A++ EQ+ R D LL GK++KE +C
Sbjct: 509 LFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIIC 555
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 24.6 bits (51), Expect = 5.0
Identities = 16/74 (21%), Positives = 33/74 (44%)
Frame = +3
Query: 78 DLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCI 257
D++ + DRP + + V D ++A + K+E+ + + K ++ K+ V
Sbjct: 625 DMAALGVSFNDRPQGSALVKLV-DAEELIAAREQKLEEERAKQAKKAQAKAEQEKKQVER 683
Query: 258 VLSDDNCPDEKIRM 299
V+ P E +M
Sbjct: 684 VMKGKTSPSEMFKM 697
>SPCC16A11.13 |usp106|luc7|U1 snRNP-associated protein
Usp106|Schizosaccharomyces pombe|chr 3|||Manual
Length = 264
Score = 24.6 bits (51), Expect = 5.0
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -3
Query: 297 SEFSHQG--NYRLRARCKRFPCGVCP 226
S F+ +G ++ R C+ F CG+CP
Sbjct: 18 SNFTSRGLVHFTDRKVCRSFLCGICP 43
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 24.2 bits (50), Expect = 6.7
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = +3
Query: 108 DRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPDE 287
DRP RLIVE A+ + + + + + E+ + FR LK + ++ + S+ + D
Sbjct: 594 DRPRRLIVEFAIEN----IQVVKRRQEKEKSFRQKAKQLKQQEDEDNLKRKRSESDVEDN 649
Query: 288 KIR 296
+ +
Sbjct: 650 EAK 652
>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
pyrophosphate phosphatase fusion 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 24.2 bits (50), Expect = 6.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -2
Query: 370 LKDTERWIPHQKDAHERLFLTTR 302
+KDT IPH KD H+R +L ++
Sbjct: 576 IKDT---IPHSKDNHKRQWLESK 595
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 24.2 bits (50), Expect = 6.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 105 CDGGSRSINHQGFYY 61
CD S+++ H GFYY
Sbjct: 285 CDTCSQNLEHVGFYY 299
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = +1
Query: 193 FNSSVVTQSCSRANAARKPFASCSQTIIAL 282
FNS + + R + KP SC T ++L
Sbjct: 503 FNSPTIIEKNFRQSVGPKPIPSCHWTSVSL 532
>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1462
Score = 23.8 bits (49), Expect = 8.8
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = +1
Query: 160 SWHFHRPKWSNFNSSVVTQSCSRANAARKPFASCSQTII 276
S HF +W V SR+ + R SC Q I+
Sbjct: 1252 SEHFQDTRWKIIYDHVCKLCLSRSRSLRAASLSCLQRIV 1290
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/35 (28%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 196 NSSVVTQ-SCSRANAARKPFASCSQTIIALMRKFG 297
+ S+ T+ +C+R +AR+P S ++++A + G
Sbjct: 176 HKSISTKGACNRVRSARRPANSSKESLLASFHETG 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,495,518
Number of Sequences: 5004
Number of extensions: 26547
Number of successful extensions: 98
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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