Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0155
(371 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 138 1e-33
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 29 0.91
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.91
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12) 29 0.91
SB_57164| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_5121| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_17802| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 27 6.4
SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06) 27 6.4
SB_19702| Best HMM Match : RVT_1 (HMM E-Value=0.0029) 26 8.5
SB_7253| Best HMM Match : TFIIA_gamma_C (HMM E-Value=3.7) 26 8.5
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 138 bits (335), Expect = 1e-33
Identities = 65/83 (78%), Positives = 76/83 (91%)
Frame = +3
Query: 75 DDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVC 254
D+L+TAIL+ K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVC
Sbjct: 5 DELATAILKNKSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVC 64
Query: 255 IVLSDDNCPDEKIRMNRVVRNNL 323
IVLSDD D+KIRMNRVVR NL
Sbjct: 65 IVLSDDTISDDKIRMNRVVRMNL 87
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 29.5 bits (63), Expect = 0.91
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 302 PCCEKQPFVCVFLMWYPSLRV 364
PCC CV LMWY S RV
Sbjct: 16 PCCVLLMSCCVMLMWYCSCRV 36
>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 29.5 bits (63), Expect = 0.91
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = +1
Query: 91 RSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANAARKP 249
RSSV R T ++ K S +T ++W +WSN++ + S SR ++ R P
Sbjct: 364 RSSV-REQATATVMSKGSYITIRNW----TRWSNYSGGGYSISNSRPSSRRNP 411
>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
Length = 672
Score = 29.5 bits (63), Expect = 0.91
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 129 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDN 275
+EE + D +V+ S LQL R T +LK K ++ +++ D++
Sbjct: 141 IEERIEDSCFLVSTSTTNSTTLQLLRNMTGILKSDSDKVSIGVLVDDES 189
>SB_57164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 153 NSVVALSQAKMEQLQLFRGD-TVLLKGKRRKETVCIVLSDDNCPDEKIR 296
N + L+ A+ E++ L R D T G+R ++T C+ +D EKIR
Sbjct: 129 NEKLPLTHAQNEEVALTRVDRTDDDPGRREEDTQCLQGLEDKMSKEKIR 177
>SB_5121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 153 NSVVALSQAKMEQLQLFRGD-TVLLKGKRRKETVCIVLSDDNCPDEKIR 296
N + L+ A+ E++ L R D T G+R ++T C+ +D EKIR
Sbjct: 129 NEKLPLTHAQNEEVALTRVDRTDDDPGRREEDTQCLQGLEDKMSKEKIR 177
>SB_17802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 79 IYRPRSSVA-RT-DPTVSLSKKQSAMTTQSWHFHRPKWSN 192
I+RP +A RT DP + K SA T HRP++S+
Sbjct: 249 IHRPSDPLAQRTIDPEIHRPSKPSAQRTIGPAIHRPRYSS 288
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 26.6 bits (56), Expect = 6.4
Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 69 SPDDLSTAILRRKDR--PNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRK 242
S D +S R+DR NR+ ++V +++ + ++ ++E+ +L + + LK KR+K
Sbjct: 1517 SYDAISRRQKSRRDRWLHNRVGTSDSVDSSSTMGSGTETRLEEEELLKQELERLKRKRKK 1576
>SB_1367| Best HMM Match : EGF_2 (HMM E-Value=5.3e-06)
Length = 776
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 346 PHQKDAHERLFLTTRFIRIFSSGQLSSESTMQTVSLRRL 230
PH+ ++ F F +IF S + ST+ T LR L
Sbjct: 534 PHEPQVYKGEFCHCEFDKIFKSNTCKNTSTIHTRRLRSL 572
>SB_19702| Best HMM Match : RVT_1 (HMM E-Value=0.0029)
Length = 451
Score = 26.2 bits (55), Expect = 8.5
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = +1
Query: 130 SKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANAARKP--FASCSQTIIALMRKFG 297
+K QS QS+ + + FN SV SC A P F + ++A +R+ G
Sbjct: 172 AKLQSKKGPQSFRYRKYLRFEFNDSVFEYSCLANGLASAPRVFTKLMKPVLASLREKG 229
>SB_7253| Best HMM Match : TFIIA_gamma_C (HMM E-Value=3.7)
Length = 178
Score = 26.2 bits (55), Expect = 8.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 290 NSDEPCCEKQPFVCVFLMWY 349
++ + CC QP CVFL+ Y
Sbjct: 110 HTTKSCCLNQPVCCVFLLVY 129
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,642,544
Number of Sequences: 59808
Number of extensions: 226648
Number of successful extensions: 636
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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