Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0155
         (371 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    25   0.69 
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    23   3.7  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    22   6.4  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    22   6.4  
AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.           22   6.4  
AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.           22   6.4  
AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic acetylch...    22   8.5  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    22   8.5  

>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -2

Query: 370 LKDTERWIPHQKDAHER----LFLTTRFIRIFSSGQLSSESTMQTVS 242
           L+D   W+PH K+  ER       T+R +R  S  + S    + +VS
Sbjct: 737 LQDKLSWLPHVKEVTERAGKIADATSRLLRNHSEPRASKAKLLASVS 783



 Score = 25.0 bits (52), Expect = 0.91
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +1

Query: 79  IYRPRSSVARTDPTVSLSKKQSAMTTQSW 165
           +Y+  S+V RTD   ++ K++   T + W
Sbjct: 849 VYQRLSAVNRTDTRANIRKQERQATIEQW 877


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
            transcriptase protein.
          Length = 1049

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 67   KALMIYRPRSSVARTDPTVSLS 132
            + L + +PRSS  R+DP   +S
Sbjct: 998  ETLRLAQPRSSAGRSDPMFRMS 1019


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 210 DTVLLKGKRRKETVCIVLSDDNCPDEKIRMNRVVRNNLSCASF*CGIHRS 359
           D  +   K  K  V +  S D   D     N VV+NN SC     GI +S
Sbjct: 97  DLRITPNKLWKPDVLMYNSADEGFDGTYHTNIVVKNNGSCLYVPPGIFKS 146


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 210 DTVLLKGKRRKETVCIVLSDDNCPDEKIRMNRVVRNNLSCASF*CGIHRS 359
           D  +   K  K  V +  S D   D     N VV+NN SC     GI +S
Sbjct: 97  DLRITPNKLWKPDVLMYNSADEGFDGTYHTNIVVKNNGSCLYVPPGIFKS 146


>AY344832-1|AAR05803.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 216 VLLKGKRRKETVCIVLSDDNCPDEKIRMNRVVRNNLSCASF 338
           VLL G  R E   ++ +  NCP+ +  +     +  +C+ F
Sbjct: 14  VLLAGSARAEPGEVIPNHPNCPEMQGPLPHYFIHPTNCSRF 54


>AY344831-1|AAR05802.1|  333|Anopheles gambiae ICHIT protein.
          Length = 333

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = +3

Query: 216 VLLKGKRRKETVCIVLSDDNCPDEKIRMNRVVRNNLSCASF 338
           VLL G  R E   ++ +  NCP+ +  +     +  +C+ F
Sbjct: 14  VLLAGSARAEPGEVIPNHPNCPEMQGPLPHYFIHPTNCSRF 54


>AY705402-1|AAU12511.1|  509|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 7 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +3

Query: 240 KETVCIVLSDDNCPDEKIRMNRVVRNNLSCASF*CGIHRS 359
           K  V +  S D   D     N VVRNN SC     GI +S
Sbjct: 90  KPDVLMYNSADEGFDGTYPTNVVVRNNGSCLYVPPGIFKS 129


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +3

Query: 240 KETVCIVLSDDNCPDEKIRMNRVVRNNLSCASF*CGIHRS 359
           K  V +  S D   D     N VVRNN SC     GI +S
Sbjct: 122 KPDVLMYNSADEGFDGTYPTNVVVRNNGSCLYVPPGIFKS 161


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 383,098
Number of Sequences: 2352
Number of extensions: 6611
Number of successful extensions: 23
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 57
effective length of database: 429,915
effective search space used: 28374390
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)