Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0155
         (371 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   1.2  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   2.0  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   8.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   8.2  

>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 20/78 (25%), Positives = 29/78 (37%)
 Frame = -1

Query: 323 KVVSHNTVHPNFLIRAIIV*EHDANGFLAAFALEQDCVTTEELKLLHFGL*KCHD*VVIA 144
           +++     H    + A IV    ++  L        CV+ E L +    L  CH  VV  
Sbjct: 265 ELIQSKPQHARRKVLAGIVQTKGSDAELICVTTGTKCVSGEHLSVSGGALNDCHAEVVAR 324

Query: 143 DCFFDNETVGSVLATEDR 90
            C  +       L TEDR
Sbjct: 325 RCLCEYLYKQLELHTEDR 342


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
          monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 70 LLLSAILFKIYC*NLRTIIIFIT 2
          +LLS+  F++    L TI+IF+T
Sbjct: 1  MLLSSAWFEVIAAVLLTILIFVT 23


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 89  GR*IIRAFIICHFIQNLLLESKNY 18
           G  +++  IIC  + N+  ++K+Y
Sbjct: 88  GAILVQVAIICEGVMNIQKDNKSY 111


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -2

Query: 346  PHQKDAHERLFLTTRFIRIFSSGQLSSESTMQTVSLRRLPLSKTVS 209
            PHQ+   ++  +  + +   +SGQL S   +  ++ + L L+ T S
Sbjct: 1102 PHQQQQQQQQKILAKVLTSSNSGQLISVENL--LAQKGLKLATTAS 1145


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 186 EQLQLFRGDTVLLKGK 233
           +QL  +RG+ V LKG+
Sbjct: 506 QQLNKYRGNGVSLKGE 521


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/11 (63%), Positives = 11/11 (100%)
 Frame = -2

Query: 109 SLRRRIAVDKS 77
           ++RRR+AVD+S
Sbjct: 473 TVRRRVAVDRS 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,011
Number of Sequences: 438
Number of extensions: 1867
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)