Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0155
(371 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 131 2e-31
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 128 1e-30
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 118 9e-28
At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak... 31 0.32
At5g67340.1 68418.m08492 armadillo/beta-catenin repeat family pr... 30 0.43
At1g20410.1 68414.m02545 expressed protein 29 0.99
At1g30750.1 68414.m03758 expressed protein 29 1.3
At1g52315.1 68414.m05903 expressed protein 28 1.7
At5g10520.1 68418.m01218 protein kinase family protein contains ... 27 3.0
At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family pr... 27 3.0
At1g49400.1 68414.m05537 ribosomal protein S17 family protein si... 27 3.0
At5g18660.1 68418.m02215 isoflavone reductase-related low simila... 27 5.3
At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family pr... 27 5.3
At2g11520.1 68415.m01242 protein kinase family protein contains ... 26 7.0
At5g64760.1 68418.m08143 26S proteasome regulatory subunit, puta... 26 9.2
At1g36320.1 68414.m04514 expressed protein similar to hypothetic... 26 9.2
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ... 26 9.2
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 131 bits (316), Expect = 2e-31
Identities = 59/89 (66%), Positives = 76/89 (85%)
Frame = +3
Query: 57 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 236
+D+KS D STAIL RK PNRL+V+EA++DDNSVV+L A ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKSKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPATMEKLQLFRGDTILIKGKK 67
Query: 237 RKETVCIVLSDDNCPDEKIRMNRVVRNNL 323
RK+TVCI L+D+ C + KIRMN+VVR+NL
Sbjct: 68 RKDTVCIALADETCEEPKIRMNKVVRSNL 96
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 128 bits (309), Expect = 1e-30
Identities = 57/89 (64%), Positives = 75/89 (84%)
Frame = +3
Query: 57 ADNKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKR 236
+D+K+ D STAIL RK PNRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK+
Sbjct: 8 SDSKTKKDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPTTMEKLQLFRGDTILIKGKK 67
Query: 237 RKETVCIVLSDDNCPDEKIRMNRVVRNNL 323
RK+TVCI L+D+ C + KIRMN+VVR+NL
Sbjct: 68 RKDTVCIALADETCEEPKIRMNKVVRSNL 96
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 118 bits (285), Expect = 9e-28
Identities = 55/90 (61%), Positives = 74/90 (82%), Gaps = 1/90 (1%)
Frame = +3
Query: 57 ADNK-SPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGK 233
+D+K + D STAIL +K NRL+V+EA++DDNSVV+L ME+LQLFRGDT+L+KGK
Sbjct: 8 SDSKGTKKDFSTAILEKKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGDTILIKGK 67
Query: 234 RRKETVCIVLSDDNCPDEKIRMNRVVRNNL 323
+RK+TVCI L+D+ C + KIRMN+VVR+NL
Sbjct: 68 KRKDTVCIALADETCDEPKIRMNKVVRSNL 97
>At4g13885.1 68417.m02151 3'-5' exonuclease-related contains weak
similarity to Pfam domain PF01612: 3'-5' exonuclease
Length = 263
Score = 30.7 bits (66), Expect = 0.32
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = -1
Query: 209 TTEELKLLHFGL*KCHD*VVIAD 141
TTEELK+ H+ L KC D +V+A+
Sbjct: 3 TTEELKISHYKLYKCFDFLVVAN 25
>At5g67340.1 68418.m08492 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 707
Score = 30.3 bits (65), Expect = 0.43
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RTRKVVSHNTVHPNFLIRAII 270
+TR+ +SH T+ PNF++RA +
Sbjct: 283 KTRQALSHTTLTPNFIVRAFL 303
>At1g20410.1 68414.m02545 expressed protein
Length = 504
Score = 29.1 bits (62), Expect = 0.99
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 357 SDGYHIRKTHTKGCFSQHGSSEFSHQGNYR 268
S +HIR T+TK G+SE +H+ R
Sbjct: 203 SSSFHIRLTYTKASDEAQGASETTHESKRR 232
>At1g30750.1 68414.m03758 expressed protein
Length = 212
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/55 (23%), Positives = 26/55 (47%)
Frame = +1
Query: 94 SSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNFNSSVVTQSCSRANAARKPFAS 258
SS +P + S++ F++P + FN + + S S ++A +PF +
Sbjct: 115 SSTGLNNPILGQPSTSSSLNQPLTGFNQPSSTGFNQPISSSSSSSSSAQNQPFTN 169
>At1g52315.1 68414.m05903 expressed protein
Length = 347
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -2
Query: 367 KDTERWIPHQKDAHERLFLTTRFIRIFSSGQLSSESTMQTVSLRRLPLSK 218
KDTE+ + E + + I S G LSS S+ + SLRR+ + K
Sbjct: 203 KDTEKSFMDEHSDDESVLSESWRIDSLSKGSLSSSSSSSSSSLRRVSVRK 252
>At5g10520.1 68418.m01218 protein kinase family protein contains
protein kinase domain, INTERPRO:IPR000719
Length = 467
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 52 KWQIIKALMIYR-PRSSVARTDPTVSLSKKQSAMTTQSWHFHRPKWSNF 195
++ +I L Y R ++ R P L+ +SA T +++ +P W NF
Sbjct: 95 RFSVIPLLASYELTRKNLRRKQP--KLTPSESAFTCEAFFMAKPSWRNF 141
>At3g54790.1 68416.m06063 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 760
Score = 27.5 bits (58), Expect = 3.0
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = -1
Query: 332 RTRKVVSHNTVHPNFLIRAIIV*EHDAN 249
RTR+V++H + PN+ ++A+I +AN
Sbjct: 281 RTRQVLTHQELIPNYTVKAMIASWLEAN 308
>At1g49400.1 68414.m05537 ribosomal protein S17 family protein
similar to 40S ribosomal protein S17 GI:1620985 from
[Nicotiana plumbaginifolia]
Length = 116
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = +1
Query: 31 SNNKF*IKWQIIKALMIYRPRSSVARTDPTVSLSKKQSAMTTQS 162
S NK I +IIK IY P+++ A + S S SA TT S
Sbjct: 64 SKNKHWIVAEIIKKARIYSPKAAAAAVSASASAS---SASTTDS 104
>At5g18660.1 68418.m02215 isoflavone reductase-related low
similarity to SP|P52575 Isoflavone reductase (EC
1.3.1.-) (IFR) {Medicago sativa}
Length = 417
Score = 26.6 bits (56), Expect = 5.3
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 63 NKSPDDLSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAK 182
NKSP D++ ++ R +V+E + +V+A+++ K
Sbjct: 78 NKSPKDINVLVVGSTGYIGRFVVKEMIKRGFNVIAVAREK 117
>At2g23140.1 68415.m02763 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 811
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/21 (38%), Positives = 17/21 (80%)
Frame = -1
Query: 332 RTRKVVSHNTVHPNFLIRAII 270
+TR+ ++H T+ PN+ ++A+I
Sbjct: 273 KTRQTLTHTTLIPNYTVKALI 293
>At2g11520.1 68415.m01242 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 510
Score = 26.2 bits (55), Expect = 7.0
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +3
Query: 126 IVEEAVSDDNSVVALSQAKMEQLQLFRGD---TVLLKGKRRKETVCIVLSDDNCPDEKIR 296
+V + V DD VVA+ +AK E + R + V L K + +L + DE++
Sbjct: 238 VVFKGVLDDGQVVAIKRAKKEHFENLRTEFKSEVDLLSKIGHRNLVKLLGYVDKGDERLI 297
Query: 297 MNRVVRN 317
+ VRN
Sbjct: 298 ITEYVRN 304
>At5g64760.1 68418.m08143 26S proteasome regulatory subunit,
putative (RPN5)
Length = 442
Score = 25.8 bits (54), Expect = 9.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 81 LSTAILRRKDRPNRLIVEEAVSDDNSVVALSQAKMEQL 194
+S A++ + DRP+ +I + V D N ++ +E+L
Sbjct: 381 VSKALIAKIDRPSGIICFQIVKDSNEILNSWATNLEKL 418
>At1g36320.1 68414.m04514 expressed protein similar to hypothetical
protein GB:CAB37532 from [Arabidopsis thaliana],
Length = 414
Score = 25.8 bits (54), Expect = 9.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 102 RKDRPNRLIVEEAVSDDNSVVALSQAK 182
+ +RP R ++ AV DD SVVA + K
Sbjct: 55 KSERPQRFVIS-AVVDDKSVVAKEEKK 80
>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
protein / LIM domain-containing protein weak similarity
to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
[Mus musculus] GI:664955; contains Pfam profiles
PF02809: Ubiquitin interaction motif, PF00412: LIM
domain
Length = 532
Score = 25.8 bits (54), Expect = 9.2
Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Frame = -3
Query: 321 GCFSQHGSSEFSHQGNYRLRARCKR---FP-CGVCP*ARLCHH-GRVE--VAPFWPVK 169
GC EFS GNY C R P C VC +H G +E PFW K
Sbjct: 201 GCSQPISEYEFSTSGNYPFHKACYRERYHPKCDVCSHFIPTNHAGLIEYRAHPFWVQK 258
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,965,078
Number of Sequences: 28952
Number of extensions: 146306
Number of successful extensions: 444
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 497853200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -