Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0154
(546 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 328 1e-90
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 324 3e-89
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 324 3e-89
SB_56| Best HMM Match : Actin (HMM E-Value=0) 322 9e-89
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 321 2e-88
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 1e-46
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 155 2e-38
SB_54| Best HMM Match : Actin (HMM E-Value=0) 108 3e-24
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 94 8e-20
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 80 1e-15
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 62 3e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 57 1e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 1e-08
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 49 3e-06
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 40 0.001
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.050
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.46
SB_13911| Best HMM Match : PAN (HMM E-Value=0.033) 31 0.46
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.46
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.1
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 30 1.1
SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07) 29 2.5
SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 27 7.6
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 328 bits (807), Expect = 1e-90
Identities = 151/155 (97%), Positives = 155/155 (100%)
Frame = +2
Query: 80 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 259
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 260 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 439
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 440 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 544
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 324 bits (796), Expect = 3e-89
Identities = 150/155 (96%), Positives = 154/155 (99%)
Frame = +2
Query: 80 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 259
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 260 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 439
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 440 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 544
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 324 bits (796), Expect = 3e-89
Identities = 148/155 (95%), Positives = 154/155 (99%)
Frame = +2
Query: 80 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 259
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 260 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 439
SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 440 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 544
TQIMFETFN+PAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 121 TQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 155
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 322 bits (792), Expect = 9e-89
Identities = 149/153 (97%), Positives = 153/153 (100%)
Frame = +2
Query: 86 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 265
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 266 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 445
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 446 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 544
IMFETFN+PAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 154
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 321 bits (789), Expect = 2e-88
Identities = 148/153 (96%), Positives = 153/153 (100%)
Frame = +2
Query: 86 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 265
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 266 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 445
RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 121
Query: 446 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 544
IMFETFN+PAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 122 IMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 154
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 183 bits (445), Expect = 1e-46
Identities = 83/89 (93%), Positives = 86/89 (96%)
Frame = +2
Query: 86 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 265
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 266 RGILTLKYPIEHGIVTNWDDMEKIWHHTF 352
RGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 70.5 bits (165), Expect = 8e-13
Identities = 33/40 (82%), Positives = 37/40 (92%)
Frame = +2
Query: 425 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 544
N + M +IMFETFN+PAMYVAIQAVLSLYASGRTTGIV+D
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMD 117
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 155 bits (376), Expect = 2e-38
Identities = 73/152 (48%), Positives = 102/152 (67%), Gaps = 3/152 (1%)
Frame = +2
Query: 98 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 271
+ +V DNG+G K G+AG + P +FPS+VGRP R + + KD VGDEA R
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRPIIRSSQKVGDIEVKDLMVGDEASQLRY 66
Query: 272 ILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPEEHPVLLTEAPLNPKANREKMTQI 448
+L + YP+++GIV NWDDM+ +W +TF +++ + P VLLTE PLNP NREKM ++
Sbjct: 67 MLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTEPPLNPMKNREKMIEV 126
Query: 449 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 544
MFE + +Y+AIQAVL+LYA G TG+V+D
Sbjct: 127 MFENYQFEGVYIAIQAVLTLYAQGLLTGVVID 158
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 108 bits (260), Expect = 3e-24
Identities = 49/71 (69%), Positives = 59/71 (83%)
Frame = +2
Query: 332 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLY 511
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA+QAV++LY
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 512 ASGRTTGIVLD 544
ASGRTTG V D
Sbjct: 2189 ASGRTTGTVFD 2199
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 104 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 205
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 93.9 bits (223), Expect = 8e-20
Identities = 39/55 (70%), Positives = 50/55 (90%)
Frame = +2
Query: 380 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 544
+HPVLLTEAPLNP+ NREK ++ FETFN PA+++++QAVLSLYA+GRTTG+VLD
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLD 180
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 79.8 bits (188), Expect = 1e-15
Identities = 32/85 (37%), Positives = 57/85 (67%)
Frame = +2
Query: 290 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 469
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 470 PAMYVAIQAVLSLYASGRTTGIVLD 544
PA ++ +VL+ +A+GR+ G+V+D
Sbjct: 63 PAFFLCKNSVLTAFANGRSNGLVID 87
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 62.1 bits (144), Expect = 3e-10
Identities = 28/33 (84%), Positives = 31/33 (93%)
Frame = +2
Query: 446 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLD 544
IMFE FN+PA+YVAIQAVLSLYASGRTTG+V D
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFD 33
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 89 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 205
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 56.8 bits (131), Expect = 1e-08
Identities = 29/73 (39%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Frame = +2
Query: 74 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKD-SYV 244
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G + KD
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIGDNVNVKDYKKY 752
Query: 245 GDEAQSKRGILTL 283
GD A +K G++ L
Sbjct: 753 GDAAVAKSGVMHL 765
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/60 (43%), Positives = 34/60 (56%)
Frame = +2
Query: 218 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 397
G+ D ++GDEA K T K+PI H IV +WD ME+ W + LR PE+H LL
Sbjct: 278 GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPEDHYFLL 336
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 48.8 bits (111), Expect = 3e-06
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Frame = +2
Query: 92 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 271
++A LV+D G+ K GFA + APR++ P+ + + + + ++ ++GD+ + +
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI-PNAIFKAKSE-------RRKLFIGDQIEECKD 283
Query: 272 ILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 361
L Y P + G + NWD ++IW +TF E
Sbjct: 284 YSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/68 (29%), Positives = 38/68 (55%)
Frame = +2
Query: 335 IWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 514
I H F + L+V P +H V++T +E++ +I+ F A+Y+ Q++L++Y+
Sbjct: 513 ILEHAFLS-LKVDPVKHKVIMTIPQNTGLQEKEELVEILLGYFRVQAVYLQEQSILAMYS 571
Query: 515 SGRTTGIV 538
+GIV
Sbjct: 572 YSAVSGIV 579
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 34.7 bits (76), Expect = 0.050
Identities = 18/39 (46%), Positives = 25/39 (64%)
Frame = -3
Query: 202 MAGPSHDRGKHCARSIISCEAGLAHTGAIVYYQRGNFFV 86
MA + D G++ + SI+S E GLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 31.5 bits (68), Expect = 0.46
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +2
Query: 281 LKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP--EEHPVLLTEAPLNPKANRE 433
L+ P + +VT+++ E++ H F + P HPV++TE NP R+
Sbjct: 131 LRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGGVNHPVIMTEPVCNPNYCRQ 183
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 177 GNTARGASSPAKPALHIPEPLSTT 106
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_13911| Best HMM Match : PAN (HMM E-Value=0.033)
Length = 534
Score = 31.5 bits (68), Expect = 0.46
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 422 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 538
A +E++ +I+ F A+Y+ Q++L++Y+ +GIV
Sbjct: 420 AKKEELVEILLGYFRVQAVYLQEQSILAMYSYSAVSGIV 458
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.46
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 177 GNTARGASSPAKPALHIPEPLSTT 106
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 177 GNTARGASSPAKPALHIPEPLSTT 106
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_10843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1259
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 406 SPQPQGQQREDDPDHVRNIQHARHVRRHPSR 498
SP P+ R D+P V A HV HPSR
Sbjct: 265 SPTPKRCVRFDEPPTVEKYSKASHVTEHPSR 295
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 30.3 bits (65), Expect = 1.1
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +3
Query: 486 PSKPCSRCTRPVVPP 530
P++PCS CT+P +PP
Sbjct: 220 PTEPCSLCTKPALPP 234
>SB_23044| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2162
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/45 (28%), Positives = 16/45 (35%)
Frame = -3
Query: 178 GKHCARSIISCEAGLAHTGAIVYYQRGNFFVAHLELVKLVRCRCD 44
G+HC + I C G GA GN+ E C D
Sbjct: 724 GRHCEKDIDECSLGYCKNGATCTNTPGNYSCQCTEFTNGTNCELD 768
>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
Length = 807
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 385 PRPAY*GSPQPQGQ---QREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHR 531
PR A +P+PQ + Q +PDHVR + V SR+ V R+Y R
Sbjct: 704 PRDATTHTPEPQQEPEVQSHMEPDHVRYMLERMSVNYPTSRSSFVDPRTYPR 755
>SB_28336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +2
Query: 410 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV 538
+ PK ++ ++F F P M +A++ + A+G TGI+
Sbjct: 174 ITPKRATSQIIFVLFCIFGLPVMMLALKTAGDIIAAGLKTGII 216
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 177 GNTARGASSPAKPALHIPEPLSTT 106
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 177 GNTARGASSPAKPALHIPEPLSTT 106
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_25841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = -2
Query: 269 LFCSVPHLLHKSPSVPYR---PSRPDGGAFPRSRETLREEHHLLRSRPCTYRS 120
LF + P L SVP P+R + G P S LR + LLR + TY +
Sbjct: 213 LFSAQPESLGPVVSVPEANAVPARVETGGTPASSPNLRVDQILLRLKMLTYNT 265
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +3
Query: 471 PPCTSPSKPCSRCTRPVVPPVSC 539
PP P P T P +PP SC
Sbjct: 973 PPLPPPPPPVQTTTAPTLPPASC 995
>SB_26826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 221
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 254 PHLLHKSPSVPYRPSRPDGGAFPRSRETLREEHHLLRSRPCTYRSHCLLPTRQLLRR 84
P L +P + RPS + S + LL RP TYR+ LP+ LL +
Sbjct: 131 PLYLPSAPLLTERPSTYRAPLYLPSAPSTYRAPLLLTERPSTYRAPLYLPSTPLLTK 187
>SB_24944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 238 RVLLSHTDHHALMAGPSHDRGKHCARSIISCEAGLAHTGAIVYY 107
R++ S T H + G H G H ++ EAGL I+ +
Sbjct: 37 RLVFSATIEHEYLGGRYHSIGAHISQETSRHEAGLTQISRIIRF 80
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 192 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 82
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 197 GAFPRSRETLREEHHLLRSRPCTYRS 120
G +P S++T R E + +RPCT S
Sbjct: 832 GCYPWSKQTFRHEGPPISARPCTAMS 857
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,068,790
Number of Sequences: 59808
Number of extensions: 492042
Number of successful extensions: 1658
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1649
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1252112599
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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