Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0153
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    86   2e-17
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205...    55   5e-08
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182...    45   6e-05
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646...    41   0.001
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531...    40   0.002
03_01_0005 + 46370-46454,46962-47071,47381-47545,47672-48463,487...    31   1.3  
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522...    30   1.7  
01_01_1166 + 9287840-9288040,9289752-9289799,9292166-9292282,929...    30   1.7  
01_06_1545 + 38144624-38145301                                         29   3.9  
08_02_1207 - 25302186-25302275,25303089-25303141,25303400-253037...    29   5.2  
11_06_0513 + 24466131-24469487                                         28   6.9  
06_03_0399 - 20403488-20405092                                         28   6.9  
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    28   9.1  
05_03_0373 - 13194723-13195847,13196219-13196809                       28   9.1  

>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 65/218 (29%), Positives = 106/218 (48%), Gaps = 2/218 (0%)
 Frame = +3

Query: 78  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 257
           MAP  Y D+GKK  D+  + Y     K  L T +  GV  T+  T   ES  VFG L ++
Sbjct: 1   MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57

Query: 258 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 437
             +K+  LT   K N+++ L T +T+ +    GLK  L      Q   ++GKL+  + ++
Sbjct: 58  --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112

Query: 438 TVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF--A 611
              +N ++ L+ + P+V+++ V   +    GV   FDT  + F+K N AL   + D   +
Sbjct: 113 YAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIAS 171

Query: 612 LHTNVDNGKDFGGSIYQKVSDKLDCGVSMKWTAGFGRH 725
           LH N ++G     S Y  V    +  V  + +  F R+
Sbjct: 172 LHLN-NHGDTLIASYYHLVKHHSNTAVGAELSHSFSRN 208


>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
            2053164-2053250,2053476-2053684,2054115-2054340,
            2054473-2054510,2054657-2054714,2055363-2055662,
            2055832-2055903,2055988-2056112,2056240-2056312,
            2056417-2056521
          Length = 1218

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 44/164 (26%), Positives = 78/164 (47%)
 Frame = +3

Query: 120  DVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKW 299
            D+  K Y+F   K  L T S SG+  T+  T  +      G + ++   K    T   K 
Sbjct: 729  DLLYKDYNFDQ-KFSLTTTSNSGLGLTA--TGVKIDELFIGDIQTQH--KSGKTTVDVKI 783

Query: 300  NTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAG 479
            ++++ ++T +T+ D+   GLK +       Q   K+GKL   + +D  A+N+ + L  + 
Sbjct: 784  DSESRVSTTVTV-DEALTGLKTSFSFRVPDQ---KSGKLDLQYLHDHFALNSTIGLT-ST 838

Query: 480  PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFA 611
            P++++AA +      AG    FD+  A  +K N  + Y   DF+
Sbjct: 839  PLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFS 882


>05_06_0213 +
           26414613-26414695,26416907-26417077,26417983-26418219,
           26418543-26418572,26419248-26419282,26421680-26421747,
           26423067-26423126,26423310-26423399,26423487-26423695,
           26424083-26424383
          Length = 427

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 35/129 (27%), Positives = 52/129 (40%), Gaps = 1/129 (0%)
 Frame = +3

Query: 315 LATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDV 494
           L T  T+ D    GLK  L   F  Q   K+ K +  + +    +N  + L+ A P+V  
Sbjct: 229 LITTFTVHDLGTPGLKGILSIPFPYQ---KSAKAEVQYLHPHAGLNAIVGLN-ANPLVSF 284

Query: 495 AAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVS 671
           + V     +  G    FDT    F+K N  L + + D      ++N G     S Y KVS
Sbjct: 285 SGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVS 344

Query: 672 DKLDCGVSM 698
                G  +
Sbjct: 345 KTSAVGAEL 353


>01_06_0491 -
           29763738-29764044,29764266-29764474,29764565-29764654,
           29764819-29764905,29765598-29765733,29766036-29766186,
           29766334-29766502
          Length = 382

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
 Frame = +3

Query: 321 TDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAA 500
           T IT +D   +GLK  +   F  QT    GK +  + +D   ++  + L  + P+V+++ 
Sbjct: 184 TTITTEDLGVSGLKQIVSLPFPYQTA---GKAELQYLHDYAGISLGVGLT-SKPLVNLSG 239

Query: 501 VLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVSDK 677
           V   +    G     DT    F+K +  L   + D A    ++N G     S Y  V+ +
Sbjct: 240 VFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNNKGDSLTASYYHLVNKE 299

Query: 678 LDCGVSMKWTAGF 716
                  + T  F
Sbjct: 300 SGTAAGAELTHSF 312


>03_02_0058 -
           5316112-5316418,5316497-5316705,5316773-5316859,
           5316945-5317055,5317536-5317643,5319082-5319149,
           5319269-5319320
          Length = 313

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 1/161 (0%)
 Frame = +3

Query: 129 SKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTE-KWNT 305
           S  ++F V K       + G +     T+ ++ G     +SS +  K    T  + K +T
Sbjct: 54  SSSFYFQVIKAVKNISMQIGGDRGLTSTAVKKGGLYTLDVSSVYKYKS---TLVDVKVDT 110

Query: 306 DNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPV 485
           ++ ++T +T+ D + +   VT      P   +  GK++  + ++  +  T + +    PV
Sbjct: 111 ESNISTTLTVFDVLPSTKLVT--SVKLPDYNS--GKVEMQYFHENASFATAVGMK-PSPV 165

Query: 486 VDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDF 608
           V+ +     QG   G    FDT   KF+K + A+G    D+
Sbjct: 166 VEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDY 206


>03_01_0005 +
           46370-46454,46962-47071,47381-47545,47672-48463,
           48730-48840,48935-49195,49415-49638,49735-49855,
           50673-51214,51302-51488,51569-51895,52047-52197,
           52287-52424,52918-53013,53276-53357,54411-54679,
           54769-54882,55050-55288,55488-55715,55799-55951,
           56479-56616,57061-57188,57598-57718,58142-58306,
           59486-59633,59772-59898,60025-60118,60119-60268,
           60577-60624,60712-60819,61040-61114,61225-61275,
           61341-61487,61584-61714,61944-62031,62204-62266,
           62336-62582,62830-62981,63056-63126,63214-63370,
           63520-63687
          Length = 2323

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = -1

Query: 564 TLLFVYQTGCVHQPANPGSLVLL 496
           TLLFVYQTG    P  PG L+LL
Sbjct: 693 TLLFVYQTGEDPPPPAPGGLLLL 715


>12_02_1123 -
           26250300-26250362,26251988-26252042,26252128-26252224,
           26252364-26253048,26253354-26253721,26253931-26254074,
           26254925-26255276
          Length = 587

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
 Frame = +3

Query: 87  PYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKF 260
           P Y   G +  D+ SK +H     LDL   S  + G++F SG+ S   +  V   L+ + 
Sbjct: 261 PQYVH-GTQLPDLESKFFH-----LDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFRE 314

Query: 261 AVKDYGLTFTEKWNTDNT 314
           A+KDY    T+  N D T
Sbjct: 315 AIKDYSTPSTKTLNRDLT 332


>01_01_1166 +
           9287840-9288040,9289752-9289799,9292166-9292282,
           9293018-9293700,9295214-9297190,9298330-9298441,
           9299848-9299904
          Length = 1064

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 657 YQKVSDKLDCGVSMKWTAGFGRHIIS 734
           +QKV D+LDCG+ +  T G  R I+S
Sbjct: 469 WQKVCDRLDCGLEINNTVGGMRKILS 494


>01_06_1545 + 38144624-38145301
          Length = 225

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
 Frame = -3

Query: 520 QPW*FSTAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP--VLVPVCGAKVPSRV 365
           QP   +TAA+S++ P  SRSK+   +   TVS      E  N    V+VP   A  P+RV
Sbjct: 29  QPQLAATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGYVVVPGVDAPAPARV 88

Query: 364 TLRPA 350
            +  A
Sbjct: 89  VVSDA 93


>08_02_1207 -
           25302186-25302275,25303089-25303141,25303400-25303788,
           25303968-25304338,25304362-25304502
          Length = 347

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 576 CSWRTLLFVYQTGCVHQPANPGSLVLLQRLQLD 478
           CSW + +    TG V  P+  G L LLQ +QL+
Sbjct: 34  CSWDSGIICSDTGHVPIPSALGDLPLLQTIQLE 66


>11_06_0513 + 24466131-24469487
          Length = 1118

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 633 HCLRLCGEQSHQIGNLEQS-CSWRTLLFVYQTGC---VHQPANPGSLVLLQRLQLD 478
           H LR        IG L  S CS R L  +  + C      P N GS+  LQRL L+
Sbjct: 686 HSLRYLNLSQTDIGKLPDSICSLRLLQTLQLSRCEKLTKLPQNIGSVTSLQRLDLE 741


>06_03_0399 - 20403488-20405092
          Length = 534

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/59 (22%), Positives = 29/59 (49%)
 Frame = +3

Query: 495 AAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVS 671
           AA   + GW+ GV+ + +   +K  +  + + Y+  D  ++ + D G     + Y+K +
Sbjct: 439 AAAAKHMGWIRGVYGEMEPYVSKNPRGAY-VNYRDLDLGVNDDGDGGGGVARARYEKAT 496


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -3

Query: 427 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 299
           ++V +  VL +  C   + SR+ L PA+ LSW   S    LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 375 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 473
           GT+  Q  T TGK+  +FT +    +  LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,380,598
Number of Sequences: 37544
Number of extensions: 428163
Number of successful extensions: 1146
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1145
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)