Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0152
         (703 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20101| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.90 
SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)                   28   8.4  

>SB_20101| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 161

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = -3

Query: 188 SSGSV*NIELSSVLDEYTKFRVNLTKIMVS 99
           SSGS  N++L ++LD Y K R+NL+  ++S
Sbjct: 123 SSGSRYNVQLENLLDFYGKKRLNLSDFLIS 152


>SB_46833| Best HMM Match : MGS (HMM E-Value=1.5e-19)
          Length = 648

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +1

Query: 361 FIIEFIVLYIFILIREAKICADGGV*NFLHLYRI*GRSVNA 483
           FI  FIVLY+F+     KI   G     L LY I GR + A
Sbjct: 566 FITFFIVLYLFLKFVFIKIEVIGKKKTVLMLYNISGRHLRA 606


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,958
Number of Sequences: 59808
Number of extensions: 252614
Number of successful extensions: 558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)