Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0151
         (492 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces pombe...    25   6.2  
SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|c...    25   6.2  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    25   8.2  
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    25   8.2  

>SPBC36.05c |clr6||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 405

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 222 IPCSKYKNSFRPSYELNITELTFHNHDIYVQRYDSI 115
           +P + Y   + P Y+LN+      NH+   Q  DSI
Sbjct: 325 LPYNDYLQYYGPDYKLNVLSNNMENHNTR-QYLDSI 359


>SPBC12C2.07c |||spermidine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 338 LKTNWFTESCDMWPG 382
           +K  WF E  +MWPG
Sbjct: 11  IKDGWFREINNMWPG 25


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 204 KNSFRPSYELNITELTFHNHDIYVQRYDS 118
           + SF P YE  ITE     H+ Y+++ ++
Sbjct: 341 RKSFTPMYEDIITEQVLTAHENYIKQLEA 369


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 11/13 (84%), Positives = 12/13 (92%), Gaps = 1/13 (7%)
 Frame = +1

Query: 418 PRKI-KYPNFPVL 453
           PRKI K+PNFPVL
Sbjct: 803 PRKIVKHPNFPVL 815


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,288
Number of Sequences: 5004
Number of extensions: 42910
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)