Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0151
(492 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43221| Best HMM Match : PHF5 (HMM E-Value=2) 29 2.8
SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023) 29 2.8
SB_4329| Best HMM Match : E2F_TDP (HMM E-Value=3.6e-10) 28 3.6
SB_35487| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09) 27 6.4
SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0) 27 6.4
SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09) 27 6.4
SB_32796| Best HMM Match : MSG (HMM E-Value=2.7) 27 6.4
SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012) 27 6.4
SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17) 27 6.4
SB_56614| Best HMM Match : PHF5 (HMM E-Value=1.1) 27 6.4
SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054) 27 6.4
SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06) 27 6.4
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.4
>SB_43221| Best HMM Match : PHF5 (HMM E-Value=2)
Length = 361
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+L+ + + G Y K+K K WF E C
Sbjct: 207 TKLLLEISEKAGFKYGDKQKCQKTNAPWFDEEC 239
>SB_8718| Best HMM Match : Lipase_GDSL (HMM E-Value=0.023)
Length = 836
Score = 28.7 bits (61), Expect = 2.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+L+ + + G Y K+K K WF E C
Sbjct: 478 TKLLLEISEKAGFKYGDKQKCQKTNAPWFDEEC 510
>SB_4329| Best HMM Match : E2F_TDP (HMM E-Value=3.6e-10)
Length = 496
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 291 IADLVLIIKARKRWTN*KPTGLRNHAICGLGGTFS-FQVKEV 413
++D VL+IKA R T PT NHA+ L S QV E+
Sbjct: 196 LSDTVLVIKAPPRTTLEIPTPNNNHALLWLKSRSSAIQVNEI 237
>SB_35487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 355 YGIMRYVAWGVLSHSKSKKYCPRKIKYPNFPVLIHPFGEGLVLAG 489
YGI RYV +G +Y P I+Y + P+G VL G
Sbjct: 145 YGI-RYVPYGTCYVPYGTRYVPYGIRYVPYGTCYVPYGTRYVLYG 188
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +1
Query: 355 YGIMRYVAWGVLSHSKSKKYCPRKIKYPNFPVLIHPFGEGLVLAG 489
YGI RYV +G +Y P I+Y + P+G VL G
Sbjct: 201 YGI-RYVPYGTYYVPYGTRYVPYGIRYVPYGTCYVPYGTRYVLYG 244
>SB_46984| Best HMM Match : Exo_endo_phos (HMM E-Value=4.2e-09)
Length = 476
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+++ + + G Y K+K K WF E C
Sbjct: 351 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 383
>SB_46241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 625
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+++ + + G Y K+K K WF E C
Sbjct: 556 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 588
>SB_42160| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1858
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+++ + + G Y K+K K WF E C
Sbjct: 1121 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 1153
>SB_41253| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)
Length = 404
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+++ + + G Y K+K K WF E C
Sbjct: 351 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 383
>SB_32796| Best HMM Match : MSG (HMM E-Value=2.7)
Length = 270
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+++ + + G Y K+K K WF E C
Sbjct: 34 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 66
>SB_25693| Best HMM Match : Exo_endo_phos (HMM E-Value=0.012)
Length = 826
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+++ + + G Y K+K K WF E C
Sbjct: 696 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 728
>SB_15701| Best HMM Match : MT-A70 (HMM E-Value=1.6e-17)
Length = 1178
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+++ + + G Y K+K K WF E C
Sbjct: 1065 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 1097
>SB_56614| Best HMM Match : PHF5 (HMM E-Value=1.1)
Length = 220
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+++ + + G Y K+K K WF E C
Sbjct: 66 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 98
>SB_24634| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00054)
Length = 1012
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+++ + + G Y K+K K WF E C
Sbjct: 942 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 974
>SB_9246| Best HMM Match : RHS_repeat (HMM E-Value=5.5e-06)
Length = 530
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 269 TCLILDFNCRLGTNY*SKKKMDKLKTNWFTESC 367
T L+++ + + G Y K+K K WF E C
Sbjct: 477 TKLLVEISEKAGFKYGDKQKCQKTNAPWFDEEC 509
>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1191
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 203 LYFEQGIHYLNVRL*RPKLSVRTCLI-LDFNCRLGTNY*SKKKMDKLKTNWFTESCDMW 376
+ F GI L+ + KLS L L NC + ++ +K D LKTN + ++W
Sbjct: 1077 IIFSAGIDVLDAEVIAEKLSKNGVLRELHINCNIISDEAAKALADGLKTNTSLKVLNLW 1135
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,955,307
Number of Sequences: 59808
Number of extensions: 294427
Number of successful extensions: 595
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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