Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0151
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified vi...    28   4.2  
AL132949-36|CAJ58501.1|  311|Caenorhabditis elegans Hypothetical...    27   7.4  

>Z77661-2|CAB01184.4|  265|Caenorhabditis elegans Hypothetical
           protein F40G12.2 protein.
          Length = 265

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +1

Query: 379 WGVLSHSKSKKYCPRKIKYPNFPVLIHPFGE 471
           W  L H KSK   P  IKYP F  + H F E
Sbjct: 227 WNCLQHLKSKNTIPDLIKYPCF--VEHQFTE 255


>U56966-2|AAA98718.1|  755|Caenorhabditis elegans Unidentified
           vitellogenin-linkedtranscript protein 3 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = +1

Query: 397 SKSKKYCPRKIKYPNFPVLIHPFGEGLVL 483
           S+ + YC + ++YP+FP++++ FGE   L
Sbjct: 57  SEDRIYCIQ-VQYPDFPLILNFFGENCPL 84


>AL132949-36|CAJ58501.1|  311|Caenorhabditis elegans Hypothetical
           protein Y53F4B.42 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 278 ILDFNCRLGTNY*SKKKMDKLKTNWFTESCDMWPGGYFLIPSQRSTAPEKSN 433
           IL+  C +G       +++   +     SCD  P    ++ SQ +  PEK N
Sbjct: 121 ILEVGCGVGNTTFPLLQVNNSSSRLMLHSCDYAPNAIRVLKSQDAYDPEKMN 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,450,165
Number of Sequences: 27780
Number of extensions: 236472
Number of successful extensions: 560
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)