Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0151
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   1.3  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   1.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   7.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 349 LVYGIMRYVAWGVLSHSKSKK 411
           L Y  + Y  WG  +  KSKK
Sbjct: 320 LEYAAVNYTYWGARAKKKSKK 340


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
 Frame = +1

Query: 403 SKKYCPRKIKYP---NFPVLIHPFGEG 474
           +KKY P +   P   + P+L+ PFG G
Sbjct: 436 AKKYLPERWTTPTTPHSPLLVAPFGAG 462


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -2

Query: 194 FALLTNSTLLNSHFTITIYMSKDMIRYI*QTETLDNDLL 78
           +A+  N T +NS   I++  SK  I+   QTE  ++  L
Sbjct: 541 YAMKMNETYINSGNKISLATSKSFIKANSQTEVSNSKKL 579


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -3

Query: 190 PFLRTQHY*THISQSRYIC 134
           P   T+HY TH  +  Y C
Sbjct: 104 PARLTRHYRTHTGEKPYQC 122


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +1

Query: 310 LLKQEKDGQTKNQLVYGI 363
           L+   +DG+TK++ + GI
Sbjct: 337 LISHYEDGETKSRFISGI 354


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 328 DGQTKNQLVYGIMRYVAWGVLSHSKSKKYCPR 423
           DG  ++ L      + AWGVL +S   +  PR
Sbjct: 601 DGTEEDALNLSSAVWFAWGVLLNSGIGEGTPR 632


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,254
Number of Sequences: 438
Number of extensions: 2924
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)