Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0151
         (492 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyc...    28   3.0  
At1g14460.1 68414.m01715 DNA polymerase-related weak similarity ...    28   3.9  
At5g62380.1 68418.m07829 no apical meristem (NAM) family protein...    27   5.2  
At3g25290.1 68416.m03158 auxin-responsive family protein similar...    27   6.9  

>At5g11300.1 68418.m01319 cyclin, putative (CYC3b) similar to cyclin
           3a [Arabidopsis thaliana] GI:509425; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain; identical to cDNA cyc3b mRNA
           for cyclin 3b protein GI:728520
          Length = 436

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 4/112 (3%)
 Frame = +1

Query: 55  PQKIYLSTN---RSLSRVSVCHMYRIISLDIYIVIVKCEFSNVEFVRRAKRVFIFRARNT 225
           P  +YL+ N   R LS  S     R+  L +  +++  ++   E        F F   NT
Sbjct: 224 PDTLYLTVNLIDRFLSN-SYIERQRLQLLGVSCMLIASKYE--ELSAPGVEEFCFITANT 280

Query: 226 LFEREIVKTET*CQNLFNFRLQLPTWY*LLKQ-EKDGQTKNQLVYGIMRYVA 378
               E++  E    N  +FRL +PT    L++  K  Q   ++ +  + Y+A
Sbjct: 281 YTRPEVLSMEIQILNFVHFRLSVPTTKTFLRRFIKAAQASYKVPFIELEYLA 332


>At1g14460.1 68414.m01715 DNA polymerase-related weak similarity to
            DNA polymerase III holoenzyme tau subunit [Thermus
            thermophilus] GI:2583049
          Length = 1116

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 251  VFTISRSNNVFLARNIKTRFALLTNSTLLNSHFT 150
            V +I+ S  + L RN++ R  LL+ + LLNS  T
Sbjct: 925  VSSITNSIEMVLRRNVEVRIILLSETELLNSKQT 958


>At5g62380.1 68418.m07829 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           OsNAC7, Oryza sativa, EMBL:AB028186
          Length = 348

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 341 KTNWFTESCDMWPGGYFLIPSQRS 412
           ++NWFT+  D+  G Y+ +P   S
Sbjct: 177 ESNWFTQQMDVGNGNYYHLPDLES 200


>At3g25290.1 68416.m03158 auxin-responsive family protein similar to
           auxin-induced protein AIR12 GI:11357190 [Arabidopsis
           thaliana]
          Length = 393

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 322 EKDGQTKNQLVYGIMRYVAWGVL 390
           E + + KN+ ++GI+  V+WG+L
Sbjct: 209 EVNAKIKNRNIHGILNAVSWGIL 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,676,284
Number of Sequences: 28952
Number of extensions: 212844
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)