Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0149
         (535 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)                    27   7.3  
SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22)               27   9.6  

>SB_18386| Best HMM Match : CH (HMM E-Value=2.8e-26)
          Length = 589

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 278 HRHAYFYRKAVMRFGLKGGAAIVTILRP*NSFSKWVAAFTLYMSMGSSNHLTS 436
           H+H YFY   VM       A I+TI+R    +   +  F + MS+ SS+  +S
Sbjct: 430 HKHPYFYPVVVM------NAIIITIIRHYLHYVVVINIFIIDMSISSSSSSSS 476


>SB_32230| Best HMM Match : Keratin_B2 (HMM E-Value=0.22)
          Length = 254

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = -1

Query: 391 CRHPF*E*ILRSQYSYNGCPALQ----TETHYCFTVEIGMAVVPTRADS 257
           CRHP  +    +   Y+G P LQ     +THYC   +  +   PT AD+
Sbjct: 147 CRHPLLQTPTIANTHYSGHPLLQIPTIADTHYC---KYPLLRTPTTADT 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,942,925
Number of Sequences: 59808
Number of extensions: 262698
Number of successful extensions: 436
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)