Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0149
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen prot...    28   4.8  
AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen prot...    28   4.8  
AL023845-4|CAA19541.1|  516|Caenorhabditis elegans Hypothetical ...    27   8.5  

>AF047652-2|AAC04393.3|  256|Caenorhabditis elegans Collagen protein
           107, isoform a protein.
          Length = 256

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 317 NALLLYGRNRHGGGTYPCG 261
           +A L++GRN+  GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AF047652-1|AAO44912.1|  294|Caenorhabditis elegans Collagen protein
           107, isoform b protein.
          Length = 294

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 317 NALLLYGRNRHGGGTYPCG 261
           +A L++GRN+  GGT  CG
Sbjct: 65  DASLIFGRNKRSGGTCGCG 83


>AL023845-4|CAA19541.1|  516|Caenorhabditis elegans Hypothetical
           protein Y51B9A.6 protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 266 TGRYHRHAYFYRKAVMRFGLKGGAAIVTILRP*NSFSKWVAAFTLY 403
           +G+Y        + +    L  G+ +V  L P +SFS+W   F +Y
Sbjct: 413 SGQYSPFVMSIVQIIACSSLMAGSFLVPALTPSDSFSEWQRVFMIY 458


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,979,782
Number of Sequences: 27780
Number of extensions: 190024
Number of successful extensions: 316
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)