Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0148
         (485 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0BYI1 Cluster: Chromosome undetermined scaffold_137, w...    36   0.64 
UniRef50_Q1ZME7 Cluster: Collagenase; n=2; Vibrionaceae|Rep: Col...    33   2.6  
UniRef50_UPI0000EBE663 Cluster: PREDICTED: similar to cerebellar...    32   7.9  
UniRef50_UPI0000E81663 Cluster: PREDICTED: similar to Cornulin; ...    32   7.9  
UniRef50_Q7W4C8 Cluster: Putative D-amino acid dehydrogenase sma...    32   7.9  
UniRef50_A2UIA8 Cluster: Putative uncharacterized protein; n=3; ...    32   7.9  
UniRef50_Q17332 Cluster: Collagen; n=2; Caenorhabditis elegans|R...    32   7.9  

>UniRef50_A0BYI1 Cluster: Chromosome undetermined scaffold_137,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_137,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 432

 Score = 35.5 bits (78), Expect = 0.64
 Identities = 14/18 (77%), Positives = 18/18 (100%)
 Frame = +3

Query: 432 DNQDSQEHQDSQEHQDSQ 485
           DNQDSQ++QDSQ++QDSQ
Sbjct: 189 DNQDSQDNQDSQDNQDSQ 206



 Score = 33.5 bits (73), Expect = 2.6
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = +3

Query: 429 QDNQDSQEHQDSQEHQDSQ 485
           QDNQDSQ++QDSQ++Q+ Q
Sbjct: 194 QDNQDSQDNQDSQDNQEFQ 212



 Score = 33.5 bits (73), Expect = 2.6
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = +3

Query: 429 QDNQDSQEHQDSQEHQDSQ 485
           QDNQDSQ++Q+ Q++QDSQ
Sbjct: 200 QDNQDSQDNQEFQDNQDSQ 218


>UniRef50_Q1ZME7 Cluster: Collagenase; n=2; Vibrionaceae|Rep:
           Collagenase - Vibrio angustum S14
          Length = 690

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +3

Query: 375 YKAWSDRIPRSTRPAGIPQDNQDSQEHQDSQEHQDS 482
           +KAW D    S       QDNQD+Q++QD+Q++QD+
Sbjct: 551 FKAWIDEGMNSN------QDNQDNQDNQDNQDNQDN 580


>UniRef50_UPI0000EBE663 Cluster: PREDICTED: similar to cerebellar
           degeneration-related protein 1, 34kDa; n=1; Bos
           taurus|Rep: PREDICTED: similar to cerebellar
           degeneration-related protein 1, 34kDa - Bos taurus
          Length = 307

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 423 SRLAWLTWVSCLTRLYRLSTLSWVAWLTW 337
           +R+ W TW+S    L+  + + W  W++W
Sbjct: 166 TRIFWKTWISWKAHLHWKTRIFWKTWISW 194


>UniRef50_UPI0000E81663 Cluster: PREDICTED: similar to Cornulin;
           n=1; Gallus gallus|Rep: PREDICTED: similar to Cornulin -
           Gallus gallus
          Length = 384

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 396 IPRSTRPAGIPQDNQDSQEHQDSQEHQDSQ 485
           +    +  G PQ +QD+Q+HQ+S+E ++ Q
Sbjct: 121 VSEQVQEGGTPQQDQDTQQHQESEEPKNHQ 150


>UniRef50_Q7W4C8 Cluster: Putative D-amino acid dehydrogenase small
           subunit; n=3; Bordetella|Rep: Putative D-amino acid
           dehydrogenase small subunit - Bordetella parapertussis
          Length = 431

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 396 SCLTRLYRLSTLSWVAWLTWLSW 328
           S   R  +L+ L+W+AWL WL+W
Sbjct: 79  SLAPRPRKLAWLAWLAWLAWLAW 101


>UniRef50_A2UIA8 Cluster: Putative uncharacterized protein; n=3;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli B
          Length = 64

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 228 LTALLWSTLSGIAWLSCCTG 169
           L+ALLW T+ G  WL+ C+G
Sbjct: 34  LSALLWVTMGGFIWLTLCSG 53


>UniRef50_Q17332 Cluster: Collagen; n=2; Caenorhabditis elegans|Rep:
           Collagen - Caenorhabditis elegans
          Length = 293

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +3

Query: 432 DNQDSQEHQDSQEHQDSQ 485
           + QD ++HQDSQEHQ+S+
Sbjct: 98  ETQDQRDHQDSQEHQESK 115


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,796,633
Number of Sequences: 1657284
Number of extensions: 2352786
Number of successful extensions: 10215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10101
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)