Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0148
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115...    31   0.37 
03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434...    29   1.5  

>01_06_1097 +
           34507376-34507395,34509380-34511214,34511263-34511598,
           34511800-34513691
          Length = 1360

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 405 STRPAGIPQDNQDSQEHQDSQEHQ 476
           ST P  IP+D+ D+  H  SQ+HQ
Sbjct: 383 STHPDTIPKDDSDTDSHVSSQDHQ 406


>03_06_0411 +
           33741903-33742163,33742990-33743168,33743342-33743426,
           33743506-33743822,33743983-33744106,33744810-33744902,
           33745296-33745364,33745654-33745704,33745705-33745854,
           33745904-33746125,33746413-33746568,33746716-33746823,
           33746992-33747126,33747209-33747364,33747544-33747664,
           33748182-33748267
          Length = 770

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 390 DRIPRSTRPAGIPQDNQDSQEHQDSQEHQDSQ 485
           D+ P    P   PQD QDSQE QD  E +D +
Sbjct: 413 DQQPPPPPPPPPPQD-QDSQEDQDEDEEEDQE 443


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,255,718
Number of Sequences: 37544
Number of extensions: 60639
Number of successful extensions: 180
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)