Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0148
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36612| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.010
SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_36612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +3

Query: 390 DRIPRSTRPAGIPQDNQDSQEHQDSQEHQDSQ 485
           ++  R  R  G PQD QD Q+ QD Q++QD Q
Sbjct: 59  EQAARPRRAGGKPQDQQDKQDKQDKQDNQDKQ 90


>SB_20002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2484

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 387  SDRIPRSTRPAGIPQDNQDSQEHQDSQEHQ 476
            S +IPR++RPAG P  N +S    + +  Q
Sbjct: 2051 SMQIPRTSRPAGYPSINHNSFSSMERRNTQ 2080


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,932,788
Number of Sequences: 59808
Number of extensions: 68924
Number of successful extensions: 326
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)