Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0148
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80451-7|AAB37841.3|  277|Caenorhabditis elegans Collagen protei...    32   0.25 
U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.     32   0.25 
AF067607-1|AAY86220.1|  342|Caenorhabditis elegans Hypothetical ...    28   3.1  
AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical ...    27   5.5  

>U80451-7|AAB37841.3|  277|Caenorhabditis elegans Collagen protein
           17 protein.
          Length = 277

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +3

Query: 432 DNQDSQEHQDSQEHQDSQ 485
           + QD ++HQDSQEHQ+S+
Sbjct: 98  ETQDQRDHQDSQEHQESK 115



 Score = 31.1 bits (67), Expect = 0.44
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +3

Query: 429 QDNQDSQEHQDSQEHQDSQ 485
           +D+QDSQEHQ+S++  D+Q
Sbjct: 103 RDHQDSQEHQESKDQMDAQ 121



 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 426 PQDNQDSQEHQDSQEHQDSQ 485
           PQD++D QE QD  E QD+Q
Sbjct: 126 PQDHKDHQEPQDKTELQDNQ 145



 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 429 QDNQDSQEHQDSQEHQDSQ 485
           QD  ++ E QD ++HQDSQ
Sbjct: 91  QDQPETPETQDQRDHQDSQ 109



 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 414 PAGIPQDNQDSQEHQDSQEHQD 479
           P+   Q  QDSQE Q+ ++HQD
Sbjct: 153 PSQPHQGTQDSQESQEPKDHQD 174


>U18384-1|AAA62504.1|  293|Caenorhabditis elegans collagen protein.
          Length = 293

 Score = 31.9 bits (69), Expect = 0.25
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +3

Query: 432 DNQDSQEHQDSQEHQDSQ 485
           + QD ++HQDSQEHQ+S+
Sbjct: 98  ETQDQRDHQDSQEHQESK 115



 Score = 31.1 bits (67), Expect = 0.44
 Identities = 11/19 (57%), Positives = 17/19 (89%)
 Frame = +3

Query: 429 QDNQDSQEHQDSQEHQDSQ 485
           +D+QDSQEHQ+S++  D+Q
Sbjct: 103 RDHQDSQEHQESKDQMDAQ 121



 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +3

Query: 426 PQDNQDSQEHQDSQEHQDSQ 485
           PQD++D QE QD  E QD+Q
Sbjct: 126 PQDHKDHQEPQDKTELQDNQ 145



 Score = 27.1 bits (57), Expect = 7.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 429 QDNQDSQEHQDSQEHQDSQ 485
           QD  ++ E QD ++HQDSQ
Sbjct: 91  QDQPETPETQDQRDHQDSQ 109



 Score = 27.1 bits (57), Expect = 7.2
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 414 PAGIPQDNQDSQEHQDSQEHQD 479
           P+   Q  QDSQE Q+ ++HQD
Sbjct: 153 PSQPHQGTQDSQESQEPKDHQD 174


>AF067607-1|AAY86220.1|  342|Caenorhabditis elegans Hypothetical
           protein C18H7.10 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 381 AWSDRIPRSTRPAGIPQDNQDSQEHQDSQEHQDSQ 485
           A S + P+  R   + ++ QD ++H   QEH+++Q
Sbjct: 281 AESSQDPQEVRVIVVNEEKQDVEQHDTIQEHKENQ 315


>AF067609-1|ABB51195.1|  394|Caenorhabditis elegans Hypothetical
           protein C23H5.11 protein.
          Length = 394

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 408 LTWVSCLTRLYRLSTLSWVAW 346
           L  ++C+ R  R S++SWVAW
Sbjct: 118 LLLLNCIRRCRRWSSVSWVAW 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,133,684
Number of Sequences: 27780
Number of extensions: 48248
Number of successful extensions: 186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)