Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0148
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.43 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.43 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.0  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.2  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 267 WLAGVSRLTRIHGLTALLWSTLSG 196
           WL G+S +  I G    +W T SG
Sbjct: 533 WLCGLSSMLCIPGYMIYIWFTTSG 556


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.0 bits (52), Expect = 0.43
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 267 WLAGVSRLTRIHGLTALLWSTLSG 196
           WL G+S +  I G    +W T SG
Sbjct: 586 WLCGLSSMLCIPGYMIYIWFTTSG 609


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 432 DNQDSQEHQDSQEH 473
           DNQ++ +H D   H
Sbjct: 439 DNQNNNQHNDQAHH 452


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 429 QDNQDSQEHQDSQEHQDSQ 485
           Q+NQ+     D+Q H  S+
Sbjct: 524 QNNQNDNNRNDNQVHHSSK 542


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,082
Number of Sequences: 438
Number of extensions: 593
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)