Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0148
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22840.1 68418.m02670 protein kinase family protein contains ...    28   2.9  
At2g01420.2 68415.m00063 auxin transport protein, putative simil...    27   6.7  
At2g01420.1 68415.m00062 auxin transport protein, putative simil...    27   6.7  
At3g48290.1 68416.m05270 cytochrome P450, putative very strong s...    27   8.9  

>At5g22840.1 68418.m02670 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 538

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +3

Query: 384 WSDRIPRSTRPAGIPQDNQDSQEHQDSQEHQDSQ 485
           W + +P+S +P+  PQ N   +E + S E +D +
Sbjct: 469 WLNPVPKSLKPSSSPQ-NPKEEEEEASDEDKDKE 501


>At2g01420.2 68415.m00063 auxin transport protein, putative similar
           to auxin transport protein PIN7[Arabidopsis thaliana]
           gi|5817305|gb|AAD52697
          Length = 616

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 405 STRPAGIPQDNQDSQEHQDSQEHQDSQ 485
           ST+P  IP++NQ   + +DS+   D++
Sbjct: 320 STKPNKIPKENQQQLQEKDSKASHDAK 346


>At2g01420.1 68415.m00062 auxin transport protein, putative similar
           to auxin transport protein PIN7[Arabidopsis thaliana]
           gi|5817305|gb|AAD52697
          Length = 612

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 405 STRPAGIPQDNQDSQEHQDSQEHQDSQ 485
           ST+P  IP++NQ   + +DS+   D++
Sbjct: 320 STKPNKIPKENQQQLQEKDSKASHDAK 346


>At3g48290.1 68416.m05270 cytochrome P450, putative very strong
           similarity to Cytochrome P450 71A24
           (SP:Q9STK9)[Arabidopsis thaliana];
          Length = 488

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -3

Query: 390 LTRLY-RLSTLSWVAWLTWLSW 328
           LTRL    S  S+V+WL W+ W
Sbjct: 204 LTRLLGEFSVGSYVSWLAWIDW 225


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,078,597
Number of Sequences: 28952
Number of extensions: 45867
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)