Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0147
         (789 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_47780| Best HMM Match : CBM_3 (HMM E-Value=1.8)                     28   7.5  

>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1576

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = +2

Query: 38  IALYDHSIYSCIIPLDNSINRILMNTYIII-CSVVIHIYFNVYICNYISVQICMYWFMV 211
           + LY  S Y  I+ L  +++ IL++ Y  I C  V+H+   +   + +  + C Y++ V
Sbjct: 444 LLLYRASRYYYIVHLAITMSCILLSLYRAIRCYYVVHVAITISCKSLVLCRACRYYYFV 502


>SB_47780| Best HMM Match : CBM_3 (HMM E-Value=1.8)
          Length = 597

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -3

Query: 385 MNSPRKVNINHVHFNKTQ**RTCKF-YLFLNLLSRINAFMSH 263
           +N+ + VN++++H N +Q  R  K  Y+ LN    +N    H
Sbjct: 166 LNTSQAVNVSYMHLNTSQAIRAVKVSYMHLNTSQAVNVSYMH 207


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,435,985
Number of Sequences: 59808
Number of extensions: 479530
Number of successful extensions: 866
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)