Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0145
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 130 9e-32
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 111 5e-26
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 41 7e-05
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 38 5e-04
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 38 7e-04
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 37 0.001
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 37 0.001
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 37 0.001
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 36 0.002
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 36 0.002
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 34 0.006
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 34 0.006
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 34 0.009
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 34 0.009
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 34 0.009
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 34 0.009
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 33 0.015
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 33 0.020
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 32 0.026
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 32 0.034
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 32 0.034
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 31 0.060
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 31 0.079
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 30 0.10
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 30 0.14
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 30 0.14
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 30 0.14
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 29 0.18
SPAC23D3.02 |rfc2||DNA replication factor C complex subunit Rfc2... 29 0.18
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 29 0.24
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 29 0.32
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 28 0.42
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 28 0.42
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 28 0.42
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 28 0.56
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 0.56
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 27 0.98
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 27 0.98
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 27 1.3
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 27 1.3
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 26 1.7
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 26 1.7
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 26 2.3
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 2.3
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 25 3.0
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 25 3.9
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 25 3.9
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 25 3.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 5.2
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 24 6.9
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 24 6.9
SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5 ... 24 6.9
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb... 24 9.1
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po... 24 9.1
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 130 bits (313), Expect = 9e-32
Identities = 61/102 (59%), Positives = 74/102 (72%)
Frame = +1
Query: 73 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 252
++I EVK + RI+ HSHIKGLGL E+G + G +GQE AREA GI+ D+I+SKK
Sbjct: 2 VQISEVKGNGRDNRITTHSHIKGLGLKEDGTCESVGGGFIGQEKAREACGIITDLIKSKK 61
Query: 253 MARRALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEVY 378
+ +L AG GTGKTA+ALAIAQELG K PFCPM GSEVY
Sbjct: 62 FGGKGVLFAGGAGTGKTALALAIAQELGPKVPFCPMVGSEVY 103
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 111 bits (266), Expect = 5e-26
Identities = 50/103 (48%), Positives = 73/103 (70%)
Frame = +1
Query: 70 NMKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSK 249
++ + +K +RI AHSHIKG+GL++N P + + G+VGQ AR AAG+++ MI+
Sbjct: 2 SISVTSHNDVSKLERIGAHSHIKGIGLNDNLEPKESSQGMVGQVKARRAAGVILKMIQEG 61
Query: 250 KMARRALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEVY 378
++A RA+L+AGPP TGKTAIA+ +AQ LG+ PF + SEVY
Sbjct: 62 RIAGRAILMAGPPSTGKTAIAMGMAQSLGSDTPFVTLSASEVY 104
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 40.7 bits (91), Expect = 7e-05
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Frame = +1
Query: 148 LDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK-------MARRALLLAGPPGTGKTA 306
++E + ++ + + G + A+E +VD +R R +LL GPPGTGKT
Sbjct: 257 MEERAINVRFS-DVQGVDEAKEELEEIVDFLRDPTHFTRLGGKLPRGVLLTGPPGTGKTM 315
Query: 307 IALAIAQELGTKGPFCPMGGSE 372
+A A+A E PF M GS+
Sbjct: 316 LARAVAGEANV--PFFFMSGSQ 335
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 37.9 bits (84), Expect = 5e-04
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
R +L+GPPGTGKT +A A A E PF + GSE
Sbjct: 330 RGAILSGPPGTGKTLLAKATAGEANV--PFLSVSGSE 364
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 37.5 bits (83), Expect = 7e-04
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 232 DMIRSKKMARRALLLAGPPGTGKTAIALAIAQE 330
D+ + + R +LL GPPGTGKT +A A+A E
Sbjct: 483 DLFQGLREPARGMLLFGPPGTGKTMLARAVATE 515
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 36.7 bits (81), Expect = 0.001
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
R +L+ GPPGTGKT +A A+A E G
Sbjct: 259 RGILMYGPPGTGKTLMARAVANETG 283
Score = 33.5 bits (73), Expect = 0.011
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE-----LGTKGP 348
+ +L GPPGTGKT +A AIA E + KGP
Sbjct: 532 KGVLFFGPPGTGKTLLAKAIANECSANFISVKGP 565
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 36.7 bits (81), Expect = 0.001
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
R +LL GPPGTGKT +A A+A EL + F + G E+
Sbjct: 688 RSGVLLYGPPGTGKTLLAKAVATELSLE--FVSIKGPEL 724
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 36.7 bits (81), Expect = 0.001
Identities = 18/38 (47%), Positives = 23/38 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
R +LL GPPG GKT +A A+A ELG PF + +
Sbjct: 209 RGVLLHGPPGCGKTMLANALANELGV--PFISISAPSI 244
Score = 33.1 bits (72), Expect = 0.015
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +1
Query: 256 ARRALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
A +LL GPPG GKT +A A+A E +K F + G E+
Sbjct: 525 APTGVLLWGPPGCGKTLLAKAVANE--SKANFISIRGPEL 562
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 36.3 bits (80), Expect = 0.002
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ +LL GPPGTGKT +A A+A K F + GSE+
Sbjct: 180 KGILLYGPPGTGKTLLARAVAHHTDCK--FIRVSGSEL 215
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 35.9 bits (79), Expect = 0.002
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
+ +LL GPPGTGKT +A A+A LG
Sbjct: 167 KGVLLYGPPGTGKTLLARAVAASLG 191
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 34.3 bits (75), Expect = 0.006
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGP 348
+ +LL GPPGTGKT IA I + L + P
Sbjct: 305 KGILLYGPPGTGKTLIARQIGKMLNAREP 333
Score = 33.5 bits (73), Expect = 0.011
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 6/104 (5%)
Frame = +1
Query: 79 IEEVKSTAKTQRISAHSHIK-GLGLDENGVPIQMAAGLVG-----QESAREAAGIVVDMI 240
+E +K + ++A S ++ G+ E + ++ G++ +E E V +
Sbjct: 520 LENIKVN-RNDFLNALSEVRPAYGVSEEELESRVQGGIINFGKHIEEIITEGKLFVQQVK 578
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
S++ ++LL+GP +GKTA+A IA LG++ PF + +E
Sbjct: 579 NSERTRLVSVLLSGPIASGKTALAATIA--LGSEFPFVKLVSAE 620
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 34.3 bits (75), Expect = 0.006
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 253 MARRALLLAGPPGTGKTAIALAIAQE 330
M R +LL GPPGTGKT + A+A E
Sbjct: 311 MPPRGVLLYGPPGTGKTMVMRAVAAE 336
Score = 31.5 bits (68), Expect = 0.045
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEVY 378
+ +LL GPPG KT A AIA E G F + G E++
Sbjct: 583 KGVLLYGPPGCSKTITAKAIATETGLN--FIAVKGPELF 619
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 33.9 bits (74), Expect = 0.009
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
R +LL GPPGTGKT + A+A T F + GSE
Sbjct: 169 RGVLLYGPPGTGKTMLVKAVAN--STAANFIRVVGSE 203
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 33.9 bits (74), Expect = 0.009
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQEL 333
RR LL GPPG+GKT+ A+A EL
Sbjct: 242 RRGYLLYGPPGSGKTSFLYALAGEL 266
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 33.9 bits (74), Expect = 0.009
Identities = 14/24 (58%), Positives = 19/24 (79%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGT 339
+LL GPPGTGK+ +A A+A E G+
Sbjct: 165 ILLYGPPGTGKSYLAKAVATEAGS 188
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 33.9 bits (74), Expect = 0.009
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE 330
+ +LL GPPGTGKT +A A+A E
Sbjct: 413 QGMLLFGPPGTGKTMLARAVATE 435
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 33.1 bits (72), Expect = 0.015
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ ++L GPPGTGKT A A+A T F + GSE+
Sbjct: 214 KGIMLYGPPGTGKTLCARAVANR--TDATFIRVIGSEL 249
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 32.7 bits (71), Expect = 0.020
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTK 342
R +L GPPGTGKT +A +A TK
Sbjct: 407 RGVLFHGPPGTGKTLMARVLAANCSTK 433
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 32.3 bits (70), Expect = 0.026
Identities = 16/38 (42%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ ++L G PGTGKT +A A+A + T F + GSE+
Sbjct: 226 KGVILYGAPGTGKTLLAKAVANQ--TSATFLRVVGSEL 261
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 31.9 bits (69), Expect = 0.034
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE 330
+ LLL GPPG GKT +A A+A++
Sbjct: 126 KGLLLYGPPGCGKTMLAKALAKQ 148
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 31.9 bits (69), Expect = 0.034
Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Frame = +1
Query: 127 SHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAR------RALLLAGPP 288
S +K + +DE G + ++ IV+ M ++ K + + L+ GPP
Sbjct: 169 SRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPP 228
Query: 289 GTGKTAIALAIAQE 330
GTGKT +A A A +
Sbjct: 229 GTGKTLLARACAAQ 242
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 31.1 bits (67), Expect = 0.060
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIA 324
R +L GPPGTGKT +A A+A
Sbjct: 301 RGVLFHGPPGTGKTLMARALA 321
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 30.7 bits (66), Expect = 0.079
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
+ +LL G PG GKT++ A+A+E G
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETG 1584
Score = 29.1 bits (62), Expect = 0.24
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQELG 336
+R +LLAGP G GK + IA +LG
Sbjct: 152 KRPILLAGPEGIGKKFLITQIAAKLG 177
Score = 25.8 bits (54), Expect = 2.3
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 226 VVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELGTK 342
+++ + + LLL G GTGKT +A LG K
Sbjct: 456 LLEQLAAGVQTNEPLLLVGETGTGKTTTIQLLAGLLGQK 494
Score = 23.8 bits (49), Expect = 9.1
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTK 342
+L+ GP +GKT++ +A++ G K
Sbjct: 897 ILIQGPTSSGKTSMIEYVAKKTGHK 921
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 30.3 bits (65), Expect = 0.10
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQEL 333
+L GPPGTGKT+ LA A+++
Sbjct: 59 MLFYGPPGTGKTSTILACARKI 80
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 29.9 bits (64), Expect = 0.14
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 253 MARRALLLAGPPGTGKTAIALAIAQEL 333
M + + L GPPG GKT++ +IA L
Sbjct: 569 MQGKIMCLVGPPGVGKTSVGKSIASAL 595
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 29.9 bits (64), Expect = 0.14
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQ 327
+A+LL+GPPG GKT A +A+
Sbjct: 410 KAVLLSGPPGIGKTTAAHLVAK 431
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 29.9 bits (64), Expect = 0.14
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +1
Query: 154 ENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
E +P Q AA L +S A + + + + R LL+ GP G GK+ +A+EL
Sbjct: 74 EKYIP-QKAADLAVHKSKISA---IKQWMLTDSLESRLLLICGPSGCGKSTAVQVLAKEL 129
Query: 334 G 336
G
Sbjct: 130 G 130
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 29.5 bits (63), Expect = 0.18
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQELGT 339
L+ GPPGTGKT + ++ L T
Sbjct: 411 LIQGPPGTGKTVTSASVVYHLAT 433
>SPAC23D3.02 |rfc2||DNA replication factor C complex subunit
Rfc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 29.5 bits (63), Expect = 0.18
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQEL 333
+L G PGTGKT+ LA+++EL
Sbjct: 55 MLFYGSPGTGKTSTILALSREL 76
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 29.1 bits (62), Expect = 0.24
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +1
Query: 187 LVGQESAREAAGIVVDMIRSK-KMARRAL---LLAGPPGTGKTAIALAIAQEL 333
++GQ+ A +A V + R+ + R L L GP G GKTA+ A+A+ L
Sbjct: 504 IIGQDEALKAIADAVRLSRAGLQNTNRPLASFLFLGPTGVGKTALTKALAEFL 556
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 274 LAGPPGTGKTAIALAIAQEL 333
L GP G GKTAI +A +
Sbjct: 137 LVGPAGVGKTAIMEGLASRI 156
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 28.7 bits (61), Expect = 0.32
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
L+ GPPGTGKT + I Q+L
Sbjct: 229 LIHGPPGTGKTHTLVEIIQQL 249
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 28.3 bits (60), Expect = 0.42
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +1
Query: 178 AAGLVGQESAREAAGIVVDMIRSKKMARR--ALLLAGPPGTGKTAI 309
+AG+VG+E+ + IV R A AL ++G PGTGKT +
Sbjct: 166 SAGVVGRENEKS---IVESFFRQHLDANAGGALYVSGAPGTGKTVL 208
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 28.3 bits (60), Expect = 0.42
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 247 KKMARRALLLA--GPPGTGKTAIALAIAQELGTK 342
+ +RRA + GP G+GKTA+ L + + LG K
Sbjct: 80 RDFSRRAFTIGVGGPVGSGKTALLLQLCRLLGEK 113
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 28.3 bits (60), Expect = 0.42
Identities = 10/22 (45%), Positives = 18/22 (81%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQELG 336
++ GP G+GKT +A A++++LG
Sbjct: 18 VVIGPAGSGKTTMAKAVSEKLG 39
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.9 bits (59), Expect = 0.56
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 253 MARRALLLAGPPGTGKTAIALAIAQEL 333
+ +R ++ GPPGTGK+ + L + L
Sbjct: 384 LTKRLSIIQGPPGTGKSFVTLKAIETL 410
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.9 bits (59), Expect = 0.56
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 115 ISAHS-HIKGLGLDENGVPIQMAAGLVG 195
+S H+ IK LD+ G+PI++ +GL+G
Sbjct: 35 VSLHNLRIKPEALDKLGIPIEITSGLIG 62
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 27.1 bits (57), Expect = 0.98
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
L+ GPPGTGKT + I L
Sbjct: 1149 LIQGPPGTGKTKTIIGIISAL 1169
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 0.98
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 261 PGHFLTSYHIDNYPCSLTCRLLTHETGCHLNRNTIF 154
PGH DN S TC + T TG H++ NT F
Sbjct: 211 PGHGFWIESFDNKSHSSTCAVATSGTGEHIS-NTCF 245
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 26.6 bits (56), Expect = 1.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQ 327
+++ G PGTGKT +A +A+
Sbjct: 11 IIICGTPGTGKTTLAEQVAE 30
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 26.6 bits (56), Expect = 1.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 253 MARRALLLAGPPGTGKTAIALAIAQELG 336
MA L+L GPPG GK A I ++ G
Sbjct: 1 MAGMRLILVGPPGAGKGTQAPNIQKKYG 28
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 26.2 bits (55), Expect = 1.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R + +AGP G+GKT++A I + L
Sbjct: 22 RFIGIAGPSGSGKTSVAQLIVKAL 45
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 26.2 bits (55), Expect = 1.7
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAI---AQELGTKG-----PFCPMGGSEV 375
L ++G PGTGKTA + QEL +G FC + G V
Sbjct: 364 LYISGTPGTGKTATVHEVIWNLQELSREGQLPEFSFCEINGMRV 407
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAI 321
L+ GPPGTGKT L +
Sbjct: 1290 LIQGPPGTGKTKTILGM 1306
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 2.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQELG 336
L+ GP GTGK+ I AI LG
Sbjct: 37 LIIGPNGTGKSTIVSAICIGLG 58
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 3.0
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
+L G PG GKT+IA +A+ +
Sbjct: 206 VLIGEPGVGKTSIAEGLARRI 226
Score = 25.4 bits (53), Expect = 3.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +1
Query: 265 ALLLAGPPGTGKTAIALAIA 324
+ L GP GTGKT + A+A
Sbjct: 616 SFLFCGPSGTGKTLLTKALA 635
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 3.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQELGTKGP 348
R LLL GPP +GK + + ++G+ P
Sbjct: 280 RTKLLLLGPPKSGKKTLLSRLFFQIGSFDP 309
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 3.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 274 LAGPPGTGKTAIALAIAQELGTK 342
++GP G+GK+ +A A+ EL K
Sbjct: 30 ISGPQGSGKSTLASALDTELTRK 52
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 25.0 bits (52), Expect = 3.9
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIA-----QELGTKGP 348
+LL G PG GKT +A AI+ Q + KGP
Sbjct: 643 ILLFGYPGCGKTYLASAISSTFPVQFISIKGP 674
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 24.6 bits (51), Expect = 5.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIAL 315
R ++ GPPG+GK+ + L
Sbjct: 2514 RCVIFCGPPGSGKSMLML 2531
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 280 GPPGTGKTAIALAIAQELG 336
GP GTGKT A++ LG
Sbjct: 1890 GPAGTGKTETVKAVSAYLG 1908
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 24.2 bits (50), Expect = 6.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQEL 333
L+++G PG GKT L +A L
Sbjct: 57 LVISGMPGIGKTTSILCLAHAL 78
>SPAPB8E5.07c |||ribosome biogenesis protein
Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1163
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 144 QAFYMTVSRDPLRFSCAFHFFNFHVESS 61
+A+ + V RD +RF+ HF N+ V S
Sbjct: 461 RAWLLPVLRDNIRFANLAHFTNYFVPLS 488
>SPBC83.14c |rfc5||DNA replication factor C complex subunit Rfc5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 358
Score = 24.2 bits (50), Expect = 6.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQEL 333
LL+ GP G GK +AI +EL
Sbjct: 37 LLVYGPSGAGKKTRVVAILREL 58
>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 455
Score = 23.8 bits (49), Expect = 9.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 196 QESAREAAGIVVDMIRSKKMA 258
++S AAGIV M SK+MA
Sbjct: 402 EQSISVAAGIVAQMYTSKRMA 422
>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 23.8 bits (49), Expect = 9.1
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 337 FQVPERWQEL*QFCQYQEALPRVKLAGPFSYFLSYRQLSLQPHVQTLDPRDRLP 176
F +P L + +Q + V+ + SYF Y +SL + P +RLP
Sbjct: 57 FIIPTSVDILVKVAGFQRYIVNVEFSNVQSYFRYYNYISLYFVTHSKVPLNRLP 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.134 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,553,212
Number of Sequences: 5004
Number of extensions: 29937
Number of successful extensions: 145
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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