Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0145
(378 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 161 1e-40
At5g67630.1 68418.m08527 DNA helicase, putative similar to RuvB-... 113 5e-26
At3g49830.1 68416.m05448 DNA helicase-related similar to DNA hel... 107 3e-24
At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 43 6e-05
At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 42 1e-04
At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 42 1e-04
At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 42 2e-04
At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 40 4e-04
At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 40 4e-04
At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 39 0.001
At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 39 0.001
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 38 0.002
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 38 0.002
At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 38 0.002
At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 38 0.002
At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 38 0.003
At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 38 0.003
At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 38 0.003
At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 38 0.003
At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 37 0.004
At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 37 0.004
At1g59870.1 68414.m06745 ABC transporter family protein similar ... 37 0.004
At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 37 0.005
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 37 0.005
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 36 0.007
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 36 0.007
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 36 0.007
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 36 0.007
At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 36 0.007
At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 36 0.007
At1g15210.1 68414.m01818 ABC transporter family protein Similar ... 36 0.007
At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 36 0.007
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 36 0.009
At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 36 0.009
At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 36 0.009
At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 36 0.009
At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 36 0.009
At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 36 0.009
At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 36 0.009
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 36 0.009
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 36 0.009
At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 36 0.012
At5g03940.1 68418.m00374 signal recognition particle 54 kDa prot... 36 0.012
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 36 0.012
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 36 0.012
At1g63160.1 68414.m07138 replication factor C 40 kDa, putative s... 36 0.012
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 36 0.012
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 35 0.016
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 35 0.016
At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 35 0.016
At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 35 0.016
At2g26910.1 68415.m03228 ABC transporter family protein similar ... 35 0.016
At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 35 0.016
At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 35 0.021
At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 35 0.021
At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 35 0.021
At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial (... 34 0.027
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 34 0.027
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 34 0.036
At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 34 0.036
At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 34 0.036
At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 34 0.036
At3g04340.1 68416.m00459 FtsH protease family protein similar to... 34 0.036
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 34 0.036
At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 33 0.048
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 33 0.048
At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 33 0.048
At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 33 0.048
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 33 0.048
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 33 0.063
At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 33 0.063
At1g73170.1 68414.m08466 expressed protein 33 0.063
At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 33 0.083
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a... 32 0.11
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 32 0.11
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 32 0.11
At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 32 0.11
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 32 0.11
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 32 0.11
At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 32 0.15
At3g05780.1 68416.m00649 Lon protease, putative similar to Lon p... 32 0.15
At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 32 0.15
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 32 0.15
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 32 0.15
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 31 0.19
At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 31 0.19
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 31 0.19
At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 31 0.19
At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 31 0.19
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 31 0.19
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 31 0.19
At1g15520.1 68414.m01867 ABC transporter family protein similar ... 31 0.19
At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 31 0.25
At4g15236.1 68417.m02335 ABC transporter family protein similar ... 31 0.25
At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 31 0.25
At2g29940.1 68415.m03642 ABC transporter family protein similar ... 31 0.25
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 31 0.34
At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 31 0.34
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 31 0.34
At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 30 0.44
At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 30 0.44
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 30 0.44
At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 30 0.44
At3g16340.1 68416.m02066 ABC transporter family protein similar ... 30 0.44
At1g66950.1 68414.m07612 ABC transporter family protein similar ... 30 0.44
At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 30 0.59
At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR... 30 0.59
At3g45450.1 68416.m04908 Clp amino terminal domain-containing pr... 30 0.59
At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR... 29 0.78
At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 29 0.78
At5g66005.2 68418.m08311 Expressed protein 29 1.0
At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR... 29 1.0
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 29 1.0
At1g77620.1 68414.m09037 expressed protein 29 1.0
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ... 29 1.4
At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR... 29 1.4
At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive eff... 29 1.4
At4g15233.1 68417.m02334 ABC transporter family protein similar ... 29 1.4
At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 29 1.4
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ... 28 1.8
At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive eff... 28 1.8
At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP tra... 28 1.8
At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP tra... 28 1.8
At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR... 28 1.8
At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR... 28 1.8
At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 28 1.8
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ... 28 1.8
At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyri... 28 1.8
At3g05790.1 68416.m00650 Lon protease, putative similar to Lon p... 28 1.8
At2g36380.1 68415.m04464 ABC transporter family protein related ... 28 1.8
At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containi... 28 1.8
At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 28 2.4
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ... 28 2.4
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 28 2.4
At4g15215.1 68417.m02332 ABC transporter family protein similar ... 28 2.4
At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 28 2.4
At2g37280.1 68415.m04573 ABC transporter family protein similar ... 28 2.4
At2g34470.1 68415.m04231 urease accessory protein (UREG) identic... 28 2.4
At2g07710.1 68415.m00998 hypothetical protein 28 2.4
At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 28 2.4
At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR... 28 2.4
At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive eff... 28 2.4
At1g03030.1 68414.m00275 phosphoribulokinase/uridine kinase fami... 28 2.4
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 27 3.1
At4g16990.3 68417.m02563 disease resistance protein (TIR-NBS cla... 27 3.1
At4g16990.2 68417.m02562 disease resistance protein (TIR-NBS cla... 27 3.1
At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS cla... 27 3.1
At4g14700.1 68417.m02259 replication control protein, putative s... 27 3.1
At4g12620.1 68417.m01988 replication control protein, putative s... 27 3.1
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 27 3.1
At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP1... 27 3.1
At1g04730.1 68414.m00469 AAA-type ATPase family protein contains... 27 3.1
At5g43140.1 68418.m05266 peroxisomal membrane 22 kDa family prot... 27 4.1
At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP1... 27 4.1
At4g15230.1 68417.m02333 ABC transporter family protein similar ... 27 4.1
At3g53480.1 68416.m05904 ABC transporter family protein PDR5-lik... 27 4.1
At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam pr... 27 4.1
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ... 27 4.1
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ... 27 4.1
At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR... 27 4.1
At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR... 27 4.1
At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR ... 27 5.5
At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 27 5.5
At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 27 5.5
At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR... 27 5.5
At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 27 5.5
At2g38770.1 68415.m04760 expressed protein 27 5.5
At1g55700.1 68414.m06378 DC1 domain-containing protein contains ... 27 5.5
At1g33290.2 68414.m04118 sporulation protein-related isoform con... 27 5.5
At1g33290.1 68414.m04117 sporulation protein-related isoform con... 27 5.5
At5g64150.1 68418.m08055 methylase family protein contains TIGRf... 26 7.2
At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR... 26 7.2
At5g35970.1 68418.m04332 DNA-binding protein, putative similar t... 26 7.2
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 26 7.2
At4g31780.2 68417.m04510 1,2-diacylglycerol 3-beta-galactosyltra... 26 7.2
At4g31780.1 68417.m04509 1,2-diacylglycerol 3-beta-galactosyltra... 26 7.2
At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing ... 26 7.2
At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR... 26 9.6
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 26 9.6
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 26 9.6
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 26 9.6
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 26 9.6
At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondri... 26 9.6
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 26 9.6
At2g19490.1 68415.m02278 recA family protein contains Pfam profi... 26 9.6
>At5g22330.1 68418.m02605 TATA box-binding protein-interacting
protein-related similar to TATA box-binding
protein-interacting protein SP:O35753 from [ Mus
musculus]
Length = 458
Score = 161 bits (392), Expect = 1e-40
Identities = 75/102 (73%), Positives = 90/102 (88%)
Frame = +1
Query: 73 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 252
+KIEE++STAK QRI+ H+HIKGLGL+ G+PI++AAG VGQ AREAAG+VVDMI+ KK
Sbjct: 4 VKIEEIQSTAKKQRIATHTHIKGLGLEPTGIPIKLAAGFVGQLEAREAAGLVVDMIKQKK 63
Query: 253 MARRALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEVY 378
MA +ALLLAGPPGTGKTA+AL I+QELG+K PFCPM GSEVY
Sbjct: 64 MAGKALLLAGPPGTGKTALALGISQELGSKVPFCPMVGSEVY 105
>At5g67630.1 68418.m08527 DNA helicase, putative similar to
RuvB-like DNA helicase reptin [Danio rerio] GI:27733814,
reptin [Drosophila melanogaster] GI:7243682
Length = 469
Score = 113 bits (271), Expect = 5e-26
Identities = 51/102 (50%), Positives = 74/102 (72%)
Frame = +1
Query: 73 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 252
+K+ E + + +RI AHSHI+GLGLD P ++ G+VGQ AR+AAG+++ MIR K
Sbjct: 4 LKLSESRDLTRVERIGAHSHIRGLGLDSALEPRAVSEGMVGQVKARKAAGVILQMIREGK 63
Query: 253 MARRALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEVY 378
+A RA+L+AG PGTGKTAIA+ +A+ LG + PF + GSE++
Sbjct: 64 IAGRAILIAGQPGTGKTAIAMGMAKSLGLETPFAMIAGSEIF 105
>At3g49830.1 68416.m05448 DNA helicase-related similar to DNA
helicase GI:4521249 from [Mus musculus]
Length = 473
Score = 107 bits (256), Expect = 3e-24
Identities = 48/102 (47%), Positives = 73/102 (71%)
Frame = +1
Query: 73 MKIEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKK 252
+++ E + + +RI AHSHI+GLGLD P ++ G+VGQ AR+AAG+ +++IR K
Sbjct: 4 LRLSETRDLTRIERIGAHSHIRGLGLDSVLEPRAVSEGMVGQIKARKAAGVTLELIRDGK 63
Query: 253 MARRALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEVY 378
++ RA+L+AG PGTGK AIA+ IA+ LG + PF + GSE++
Sbjct: 64 ISGRAILIAGQPGTGKIAIAMGIAKSLGQETPFTMIAGSEIF 105
>At2g26140.1 68415.m03137 FtsH protease, putative contains
similarity to YME1 GI:295582, a member of the
ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding
genes from [Saccharomyces cerevisiae]
Length = 717
Score = 43.2 bits (97), Expect = 6e-05
Identities = 34/90 (37%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Frame = +1
Query: 136 KGLGLDENGVPIQMAA----GLVGQESAREAAGIVVDMIRSKKMARR-------ALLLAG 282
KGLGL E P ++ + G + A+ +V +R K R +LL G
Sbjct: 208 KGLGLHEEVQPSMDSSTKFSDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVG 267
Query: 283 PPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
PPGTGKT +A AIA E G PF GSE
Sbjct: 268 PPGTGKTMLARAIAGEAGV--PFFSCSGSE 295
>At5g15250.1 68418.m01786 FtsH protease, putative similar to
FtsH-like protein Pftf precursor GI:4325041 from
[Nicotiana tabacum]
Length = 687
Score = 42.3 bits (95), Expect = 1e-04
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
+ +LL GPPGTGKT +A AIA E G PF + GSE
Sbjct: 257 KGVLLTGPPGTGKTLLAKAIAGEAGV--PFFSLSGSE 291
>At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc
dependent protease GI:7650138 from [Arabidopsis
thaliana]
Length = 685
Score = 41.9 bits (94), Expect = 1e-04
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
+ +LL GPPGTGKT +A AIA E G PF + GSE
Sbjct: 254 KGVLLVGPPGTGKTLLAKAIAGEAGV--PFFSISGSE 288
>At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc
dependent protease VAR2 GI:7650138 from [Arabidopsis
thaliana]
Length = 695
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/37 (56%), Positives = 25/37 (67%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
+ +LL GPPGTGKT +A AIA E G PF + GSE
Sbjct: 261 KGVLLIGPPGTGKTLLAKAIAGEAGV--PFFSISGSE 295
>At4g23940.1 68417.m03443 FtsH protease, putative contains
similarity to zinc dependent protease GI:7650138 from
[Arabidopsis thaliana]
Length = 946
Score = 40.3 bits (90), Expect = 4e-04
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
+LL GPPG GKT +A AIA E G PF M GSE
Sbjct: 466 VLLEGPPGCGKTLVAKAIAGEAGV--PFYQMAGSE 498
>At3g02450.1 68416.m00232 cell division protein ftsH, putative
similar to SWISS-PROT:P46469 cell division protein ftsH
homolog [Lactococcus lactis]; contains Pfam domain,
PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with
diverse cellular 'A'ctivities)
Length = 622
Score = 40.3 bits (90), Expect = 4e-04
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
R +LL GPPGTGKT +A A+A E G PF + SE
Sbjct: 368 RGVLLVGPPGTGKTLLARAVAGEAGV--PFFSVSASE 402
>At1g64110.2 68414.m07264 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 829
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
R +LL GPPGTGKT +A AIA+E G
Sbjct: 556 RGILLFGPPGTGKTMLAKAIAKEAG 580
>At1g64110.1 68414.m07263 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 824
Score = 38.7 bits (86), Expect = 0.001
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
R +LL GPPGTGKT +A AIA+E G
Sbjct: 551 RGILLFGPPGTGKTMLAKAIAKEAG 575
>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 726
Score = 37.9 bits (84), Expect = 0.002
Identities = 17/25 (68%), Positives = 19/25 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
R +LL GPPGTGKT +A AIA E G
Sbjct: 449 RGILLFGPPGTGKTMMAKAIANEAG 473
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
+ LL GPPGTGKT +A A A E G PF + GS+
Sbjct: 356 KGALLVGPPGTGKTLLAKATAGESGV--PFLSISGSD 390
>At1g79560.1 68414.m09275 FtsH protease, putative contains
similarity to chloroplast FtsH protease GI:5804782 from
[Nicotiana tabacum]
Length = 1008
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
R +LL+GPPGTGKT A +A+E G PF G+E
Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKESGL--PFVFASGAE 561
>At1g03000.1 68414.m00271 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 941
Score = 37.9 bits (84), Expect = 0.002
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 5/44 (11%)
Frame = +1
Query: 232 DMIRSKKMARRALLLAGPPGTGKTAIALAIAQE-----LGTKGP 348
D+ S R +LL GPPGTGKT +A A+A E L KGP
Sbjct: 682 DLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGP 725
>At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to
zinc dependent protease [Arabidopsis thaliana]
GI:7650138; contains Pfam profile PF00004: ATPase AAA
family
Length = 855
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
+ +LL GPPGTGKT +A AIA E G PF G++
Sbjct: 350 KGVLLHGPPGTGKTLLAKAIAGEAGL--PFFAANGTD 384
>At5g53170.1 68418.m06610 FtsH protease, putative similar to
ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus
musculus]
Length = 806
Score = 37.5 bits (83), Expect = 0.003
Identities = 20/37 (54%), Positives = 23/37 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
+ +LL G PGTGKT +A AIA E G PF GSE
Sbjct: 396 KGILLTGAPGTGKTLLAKAIAGEAGV--PFFYRAGSE 430
>At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH
protease GI:13183728 from [Medicago sativa]
Length = 704
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
+ LL GPPGTGKT +A A+A E G PF SE
Sbjct: 284 KGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASE 318
>At1g50250.1 68414.m05634 cell division protein ftsH homolog 1,
chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell
division protein ftsH homolog 1, chloroplast
precursor (EC 3.4.24.-) [Arabidopsis thaliana]
Length = 716
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/37 (51%), Positives = 22/37 (59%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
+ LL GPPGTGKT +A A+A E G PF SE
Sbjct: 296 KGCLLVGPPGTGKTLLARAVAGEAGV--PFFSCAASE 330
>At4g27680.1 68417.m03980 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 398
Score = 37.1 bits (82), Expect = 0.004
Identities = 16/26 (61%), Positives = 21/26 (80%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQELG 336
++ +LL GPPGTGKT +A AIA+E G
Sbjct: 119 QKGVLLYGPPGTGKTMLAKAIAKESG 144
>At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1
(KTN1) [Arabidopsis thaliana] GI:14133602
Length = 523
Score = 37.1 bits (82), Expect = 0.004
Identities = 15/26 (57%), Positives = 20/26 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGT 339
+ +L+ GPPGTGKT +A A+A E GT
Sbjct: 273 KGVLMFGPPGTGKTLLAKAVATECGT 298
>At1g59870.1 68414.m06745 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1469
Score = 37.1 bits (82), Expect = 0.004
Identities = 19/54 (35%), Positives = 31/54 (57%)
Frame = +1
Query: 172 QMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
+ A G++G + A++A ++ I R LL GPP +GKT + LA+A +L
Sbjct: 168 ESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTTLLLALAGKL 221
>At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to
HPV16 E1 protein binding protein [Homo sapiens]
gi|2232019|gb|AAB64095; contains Pfam domain, PF00004:
ATPase, AAA family ('A'TPases 'A'ssociated with diverse
cellular 'A'ctivities)
Length = 467
Score = 36.7 bits (81), Expect = 0.005
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTK 342
R +LL GPPGTGKT++ A+AQ+L +
Sbjct: 203 RIILLHGPPGTGKTSLCKALAQKLSIR 229
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 36.7 bits (81), Expect = 0.005
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Frame = +1
Query: 181 AGLVGQESAREAAGIVVDMIRS-KKMAR------RALLLAGPPGTGKTAIALAIAQELGT 339
A + G + A+E +V+ +R+ +K R R +LL G PGTGKT +A A+A E
Sbjct: 325 ADVAGVDEAKEELEEIVEFLRNPEKYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--A 382
Query: 340 KGPFCPMGGSE 372
+ PF SE
Sbjct: 383 EVPFISCSASE 393
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 36.3 bits (80), Expect = 0.007
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ +LL GPPG+GKT IA A+A E G FC + G E+
Sbjct: 242 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEI 277
Score = 31.1 bits (67), Expect = 0.25
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE-----LGTKGP 348
+ +L GPPG GKT +A AIA E + KGP
Sbjct: 515 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 548
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to Spastin
(Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment)
(Swiss-Prot:Q9QYY8) [Mus musculus]; similar to
mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
+ +LL GPPGTGKT +A A+A E G
Sbjct: 999 KGILLFGPPGTGKTMLAKAVATEAG 1023
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 36.3 bits (80), Expect = 0.007
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ +LL GPPG+GKT IA A+A E G FC + G E+
Sbjct: 243 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEI 278
Score = 30.7 bits (66), Expect = 0.34
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE 330
+ +L GPPG GKT +A AIA E
Sbjct: 516 KGVLFYGPPGCGKTLLAKAIANE 538
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 36.3 bits (80), Expect = 0.007
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ +LL GPPG+GKT IA A+A E G FC + G E+
Sbjct: 242 KGILLYGPPGSGKTLIARAVANETGAFF-FC-INGPEI 277
Score = 31.1 bits (67), Expect = 0.25
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE-----LGTKGP 348
+ +L GPPG GKT +A AIA E + KGP
Sbjct: 515 KGVLFYGPPGCGKTLLAKAIANECQANFISVKGP 548
>At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to
SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains
Pfam profiles PF00004: ATPase AAA family, PF04212: MIT
domain
Length = 487
Score = 36.3 bits (80), Expect = 0.007
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 232 DMIRSKKMARRALLLAGPPGTGKTAIALAIAQE 330
D+ + R LLL GPPG GKT +A A+A E
Sbjct: 240 DLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE 272
>At2g03670.1 68415.m00326 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 603
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE 330
R LLL GPPGTGKT++ A+ QE
Sbjct: 57 RGLLLYGPPGTGKTSLVRAVVQE 79
>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
gb|Z70524 GI:1514643 PDR5-like ABC transporter from
Spirodela polyrrhiza and is a member of the PF|00005 ABC
transporter family. ESTs gb|N97039 and gb|T43169 come
from this gene
Length = 1442
Score = 36.3 bits (80), Expect = 0.007
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +1
Query: 172 QMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
+ A G++G A++A ++ + R LL GPP +GKT + LA+A +L
Sbjct: 166 EAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKL 219
>At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam
domain, PF00004: ATPase, AAA family; similar to
mitochondrial sorting protein 1 (MSP1) (TAT-binding
homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae]
Length = 1252
Score = 36.3 bits (80), Expect = 0.007
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
+ +LL GPPGTGKT +A A+A E G
Sbjct: 986 KGILLFGPPGTGKTMLAKAVATEAG 1010
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 35.9 bits (79), Expect = 0.009
Identities = 19/37 (51%), Positives = 23/37 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
R +LL GPPGTGKT +A A+A T F + GSE
Sbjct: 190 RGVLLYGPPGTGKTMLAKAVANH--TTAAFIRVVGSE 224
>At4g04180.1 68417.m00593 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 609
Score = 35.9 bits (79), Expect = 0.009
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPM 360
RA+L GPPGTGKT+ A IA + G + P+
Sbjct: 362 RAVLFEGPPGTGKTSCARVIANQAGIPLLYVPL 394
>At3g27120.1 68416.m03393 spastin ATPase, putative similar to
SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus];
contains Pfam domain, PF00004: ATPase, AAA family
Length = 287
Score = 35.9 bits (79), Expect = 0.009
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1
Query: 232 DMIRSKKMARRALLLAGPPGTGKTAIALAIAQE 330
D+ + + + LLL GPPGTGKT I AIA E
Sbjct: 34 DIFKGCRSPGKGLLLFGPPGTGKTMIGKAIAGE 66
>At3g19740.1 68416.m02499 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 439
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
+ +LL GPPGTGKT +A A+A E G
Sbjct: 186 KGILLFGPPGTGKTLLAKALATEAG 210
>At2g34560.2 68415.m04246 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 393
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGT 339
+ +LL GPPGTGKT +A A+A E T
Sbjct: 146 KGILLFGPPGTGKTMLAKAVATECNT 171
>At2g34560.1 68415.m04245 katanin, putative similar to katanin p60
subunit [Strongylocentrotus purpuratus] GI:3098603;
contains Pfam profile PF00004: ATPase AAA family
Length = 384
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/26 (57%), Positives = 19/26 (73%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGT 339
+ +LL GPPGTGKT +A A+A E T
Sbjct: 137 KGILLFGPPGTGKTMLAKAVATECNT 162
>At1g50140.1 68414.m05623 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 640
Score = 35.9 bits (79), Expect = 0.009
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG 336
+ +LL GPPGTGKT +A A+A E G
Sbjct: 387 KGILLFGPPGTGKTLLAKALATEAG 411
>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
Werner helicase interacting protein [Homo sapiens]
GI:14349166; contains Pfam profiles PF00004: ATPase
family associated with various cellular activities
(AAA), PF00627: UBA/TS-N domain; contains
ATP/GTP-binding site motif A (P-loop)
Length = 525
Score = 35.9 bits (79), Expect = 0.009
Identities = 21/73 (28%), Positives = 40/73 (54%)
Frame = +1
Query: 103 KTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAG 282
K ++S+ SH + L E P + +VGQ+ + ++ + S ++ +++ G
Sbjct: 88 KRHKLSSSSHRQHQPLSERMRP-RTLDDVVGQDHLLSPSSLLRSAVESNRLP--SIVFWG 144
Query: 283 PPGTGKTAIALAI 321
PPGTGKT+IA ++
Sbjct: 145 PPGTGKTSIAKSL 157
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 35.9 bits (79), Expect = 0.009
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAI---AQELGTKGPFCPMGGSEV 375
R +LL GPPGTGKT IA A+ A + G K F G++V
Sbjct: 416 RGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADV 456
>At5g53540.1 68418.m06653 MSP1 protein, putative /
intramitochondrial sorting protein, putative similar to
Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4)
[Saccharomyces cerevisiae]; contains Pfam domain,
PF00004: ATPase, AAA family
Length = 403
Score = 35.5 bits (78), Expect = 0.012
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQE 330
++ +LL GPPGTGKT +A AIA+E
Sbjct: 122 QKGVLLYGPPGTGKTMLAKAIARE 145
>At5g03940.1 68418.m00374 signal recognition particle 54 kDa
protein, chloroplast / 54 chloroplast protein / SRP54
(FFC) identical to Swiss-Prot:P37107 signal recognition
particle 54 kDa protein, chloroplast precursor (SRP54)
(54 chloroplast protein) (54CP) (FFC) [Arabidopsis
thaliana]
Length = 564
Score = 35.5 bits (78), Expect = 0.012
Identities = 23/80 (28%), Positives = 36/80 (45%)
Frame = +1
Query: 139 GLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALA 318
G+G+ P Q +V E + G V ++ + K +LLAG G GKT +
Sbjct: 137 GMGVIRGVKPDQQLVKIVHDELVKLMGGEVSEL-QFAKSGPTVILLAGLQGVGKTTVCAK 195
Query: 319 IAQELGTKGPFCPMGGSEVY 378
+A L +G C + +VY
Sbjct: 196 LACYLKKQGKSCMLIAGDVY 215
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 35.5 bits (78), Expect = 0.012
Identities = 22/54 (40%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Frame = +1
Query: 181 AGLVGQESAREAAGIVV----DMIRSKKMARRALLLAGPPGTGKTAIALAIAQE 330
AGL + A + A I+ K+ RA LL GPPGTGK+ +A A+A E
Sbjct: 135 AGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATE 188
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 35.5 bits (78), Expect = 0.012
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQELG------TKGPFCPMGGSEV 375
+S K R ++ GPPGTGKT +A IA++ G T G P+G V
Sbjct: 379 KSHKAPFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGAQAV 429
>At1g63160.1 68414.m07138 replication factor C 40 kDa, putative
similar to SWISS-PROT:Q9WUK4 activator 1 40 kDa subunit
(Replication factor C 40 kDa subunit, A1 40 kDa subunit,
RF-C 40 kDa subunit, RFC40) [Mus musculus]
Length = 333
Score = 35.5 bits (78), Expect = 0.012
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQEL 333
L+L+GPPGTGKT LA+A EL
Sbjct: 51 LILSGPPGTGKTTSILALAHEL 72
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 35.5 bits (78), Expect = 0.012
Identities = 18/37 (48%), Positives = 22/37 (59%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSE 372
+ LL GPPGTGKT +A A A E PF + GS+
Sbjct: 361 KGALLVGPPGTGKTLLAKATAGESAV--PFLSISGSD 395
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 35.1 bits (77), Expect = 0.016
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ +LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 196 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL 231
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 35.1 bits (77), Expect = 0.016
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ +LL GPPGTGKT +A A+A T F + GSE+
Sbjct: 196 KGVLLYGPPGTGKTLLARAVAHH--TDCTFIRVSGSEL 231
>At4g24860.1 68417.m03559 AAA-type ATPase family protein contains
Pfam profile PF00004: ATPase, AAA family
Length = 1122
Score = 35.1 bits (77), Expect = 0.016
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQE 330
+ +LL GPPGTGKT +A A+A+E
Sbjct: 856 KGILLFGPPGTGKTMLAKAVAKE 878
>At3g01610.1 68416.m00092 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 820
Score = 35.1 bits (77), Expect = 0.016
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+L GPPG GKT +A AIA E G PF + +EV
Sbjct: 270 ILFHGPPGCGKTKLANAIANEAGV--PFYKISATEV 303
Score = 32.7 bits (71), Expect = 0.083
Identities = 18/35 (51%), Positives = 21/35 (60%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
LL GPPG GKT IA A A E G F + G+E+
Sbjct: 566 LLYGPPGCGKTLIAKAAANEAGAN--FMHIKGAEL 598
>At2g26910.1 68415.m03228 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1420
Score = 35.1 bits (77), Expect = 0.016
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +1
Query: 226 VVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELGT 339
++D I R LL GPP +GKT + LA+A LGT
Sbjct: 150 ILDGISGVIRPSRLTLLLGPPSSGKTTLLLALAGRLGT 187
>At1g77470.1 68414.m09021 replication factor C 36 kDA, putative
similar to SWISS-PROT:P40937 activator 1 36 kDa subunit
(Replication factor C 36 kDa subunit, A1 36 kDa subunit,
RF-C 36 kDa subunit, RFC36) [Homo sapiens]
Length = 369
Score = 35.1 bits (77), Expect = 0.016
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQEL 333
LLL GPPGTGKT+ LA+A++L
Sbjct: 75 LLLYGPPGTGKTSTILAVARKL 96
>At5g17730.1 68418.m02079 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 470
Score = 34.7 bits (76), Expect = 0.021
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
R K +R LL GPPGTGKT++ AIA L
Sbjct: 239 RVGKPWKRGYLLYGPPGTGKTSLVAAIANYL 269
>At1g21690.2 68414.m02715 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 327
Score = 34.7 bits (76), Expect = 0.021
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQEL 333
+L GPPGTGKT ALAIA +L
Sbjct: 33 MLFYGPPGTGKTTTALAIAHQL 54
>At1g21690.1 68414.m02714 replication factor C 37 kDa, putative
Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit, A1 37 kDa subunit,
RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains
Pfam domain, PF00004: ATPase, AAA family
Length = 339
Score = 34.7 bits (76), Expect = 0.021
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQEL 333
+L GPPGTGKT ALAIA +L
Sbjct: 45 MLFYGPPGTGKTTTALAIAHQL 66
>At5g47040.1 68418.m05797 Lon protease homolog 1, mitochondrial
(LON) identical to Lon protease homolog 1 mitochondrial
precursor SP:O64948 from [Arabidopsis thaliana]
Length = 888
Score = 34.3 bits (75), Expect = 0.027
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKGPFCPMGG 366
L GPPG GKT++A +IA LG K +GG
Sbjct: 404 LCFVGPPGVGKTSLASSIAAALGRKFVRLSLGG 436
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 34.3 bits (75), Expect = 0.027
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +1
Query: 127 SHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAR------RALLLAGPP 288
S +K + +DE G + ++ IV+ M ++ + + +LL GPP
Sbjct: 155 SRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPP 214
Query: 289 GTGKTAIALAIAQELGTKGPFCPMGGSEV 375
GTGKT +A A A + T F + G ++
Sbjct: 215 GTGKTLMARACAAQ--TNATFLKLAGPQL 241
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 33.9 bits (74), Expect = 0.036
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQELG------TKGPFCPMGGSEV 375
+S + R ++ GPPGTGKT +A IA++ G T G P+G V
Sbjct: 364 KSHQAPFRNMMFYGPPGTGKTMVAREIARKSGLDYAMMTGGDVAPLGSQAV 414
>At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to
SP|P18708 Vesicular-fusion protein NSF
(N-ethylmaleimide-sensitive fusion protein)
(NEM-sensitive fusion protein) {Cricetulus griseus};
contains Pfam profiles PF00004: ATPase AAA family,
PF02359: Cell division protein 48 (CDC48) N-terminal
domain; contains non-consensus AT-AC splice sites at
intron 2
Length = 742
Score = 33.9 bits (74), Expect = 0.036
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGP 348
+ +LL GPPGTGKT +A I + L K P
Sbjct: 251 KGMLLFGPPGTGKTLMARQIGKMLNGKDP 279
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 217 AGIVVDMIR-SKKMARRALLLAGPPGTGKTAIALAI 321
A ++V+ ++ S + LL GP G+GKTA+A I
Sbjct: 515 AMLLVEQVKVSTRSPLVTCLLEGPSGSGKTALAATI 550
>At3g50940.1 68416.m05577 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 33.9 bits (74), Expect = 0.036
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
R K +R LL GPPGTGK+++ AIA L
Sbjct: 241 RVGKAWKRGYLLYGPPGTGKSSLIAAIANHL 271
>At3g16290.1 68416.m02056 FtsH protease, putative contains
similarity to cell division protein FtsH GI:1652085 from
[Synechocystis sp. PCC 6803]
Length = 876
Score = 33.9 bits (74), Expect = 0.036
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELG 336
+LL GPPG GKT +A A+A E G
Sbjct: 446 ILLCGPPGVGKTLLAKAVAGEAG 468
>At3g04340.1 68416.m00459 FtsH protease family protein similar to
chloroplast FtsH protease [Arabidopsis thaliana]
GI:1483215; contains Pfam profiles PF01434: Peptidase
family M41, PF00004: ATPase AAA family
Length = 960
Score = 33.9 bits (74), Expect = 0.036
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
Frame = +1
Query: 199 ESAREAAGIVVDMIRSKKM-------ARRALLLAGPPGTGKTAIALAIAQE 330
ES RE VV +++ K A R +L+ G GTGKT++ALAIA E
Sbjct: 430 ESMREEINEVVAFLQNPKAFQEMGARAPRGVLIVGERGTGKTSLALAIAAE 480
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 33.9 bits (74), Expect = 0.036
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Frame = +1
Query: 127 SHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMAR------RALLLAGPP 288
S +K + +DE G + ++ IV+ M ++ + + +LL GPP
Sbjct: 154 SRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPP 213
Query: 289 GTGKTAIALAIAQELGTKGPFCPMGGSEV 375
GTGKT +A A A + T F + G ++
Sbjct: 214 GTGKTLMARACAAQ--TNATFLKLAGPQL 240
>At5g58870.1 68418.m07376 FtsH protease, putative contains
similarity to cell division protein FtsH homolog 3
SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis
sp.}
Length = 806
Score = 33.5 bits (73), Expect = 0.048
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Frame = +1
Query: 181 AGLVGQESAREAAGIVVDMIRSKKM-----AR--RALLLAGPPGTGKTAIALAIAQELGT 339
A + G + A+E +V+ +++ AR R +LL G PGTGKT +A A+A E +
Sbjct: 329 ADVAGVDEAKEELEEIVEFLKNPDRYVRLGARPPRGVLLVGLPGTGKTLLAKAVAGE--S 386
Query: 340 KGPFCPMGGSE 372
PF SE
Sbjct: 387 DVPFISCSASE 397
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 33.5 bits (73), Expect = 0.048
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
+ +LL GPPGTGKT +A AIA +
Sbjct: 174 KGVLLYGPPGTGKTLLARAIASNI 197
>At4g30250.1 68417.m04301 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 512
Score = 33.5 bits (73), Expect = 0.048
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQELG 336
+R LL GPPGTGK+++ A+A LG
Sbjct: 238 KRGYLLYGPPGTGKSSLIAAMANYLG 263
>At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 639
Score = 33.5 bits (73), Expect = 0.048
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG------TKGPFCPMGGSEV 375
R +LL GPPGTGKT A +A++ G T G P+G V
Sbjct: 398 RNILLHGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGAQAV 441
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 33.5 bits (73), Expect = 0.048
Identities = 14/24 (58%), Positives = 18/24 (75%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
+ +LL GPPGTGKT +A AIA +
Sbjct: 174 KGVLLYGPPGTGKTLLARAIASNI 197
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 33.1 bits (72), Expect = 0.063
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQELG 336
+R LL GPPGTGK+++ A+A LG
Sbjct: 237 KRGYLLYGPPGTGKSSMIAAMANYLG 262
>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
calmodulin-binding protein GI:6760428 from [Arabidopsis
thaliana]
Length = 1022
Score = 33.1 bits (72), Expect = 0.063
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ +L+ GPPGTGKT++A A+ G F + G E+
Sbjct: 419 KGVLIHGPPGTGKTSLARTFARHSGVN--FFSVNGPEI 454
>At1g73170.1 68414.m08466 expressed protein
Length = 666
Score = 33.1 bits (72), Expect = 0.063
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +1
Query: 202 SAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELG 336
S R +A ++ D+++ +LLL GPPG GKT + +A+ LG
Sbjct: 182 SVRGSANLLRDLVQDGN----SLLLIGPPGVGKTTMIREVARMLG 222
>At3g50930.1 68416.m05576 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 576
Score = 32.7 bits (71), Expect = 0.083
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
R K +R LL GPPGTGK+++ A+A L
Sbjct: 293 RVGKAWKRGYLLYGPPGTGKSSLIAAMANHL 323
>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
almost identical to Lon protease homolog 2
mitochondrial precursor SP:P93655, GI:1848290 from
[Arabidopsis thaliana]
Length = 940
Score = 32.3 bits (70), Expect = 0.11
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 223 IVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELGTK 342
I V +R + + L+GPPG GKT+I +IA+ L K
Sbjct: 446 IAVGRLRGTSQGK-IICLSGPPGVGKTSIGRSIARALNRK 484
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
R K +R LL GPPGTGK+++ A+A L
Sbjct: 247 RVGKAWKRGYLLYGPPGTGKSSLVAAMANYL 277
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
R K +R LL GPPGTGK+++ A+A L
Sbjct: 247 RVGKAWKRGYLLYGPPGTGKSSLVAAMANYL 277
>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
contains Pfam profile: ATPase family PF00004
gene_id:K17E7.100 contains Pfam profile: ATPase family
PF00004
Length = 533
Score = 32.3 bits (70), Expect = 0.11
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
R K +R LL GPPGTGK+++ A+A L
Sbjct: 239 RVGKAWKRGYLLYGPPGTGKSSLVAAMANYL 269
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 32.3 bits (70), Expect = 0.11
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELG 336
+LL GP GTGKT +A A+A E G
Sbjct: 773 ILLFGPSGTGKTMLAKAVATEAG 795
>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 32.3 bits (70), Expect = 0.11
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQEL 333
+R LL GPPGTGK+++ AIA +
Sbjct: 239 KRGYLLYGPPGTGKSSMVAAIANHM 263
>At4g05380.1 68417.m00820 AAA-type ATPase family protein contains
similarity to mitochondrial ATPase (AAA family) Bcs1p,
Saccharomyces cerevisiae, Swiss Prot:P32839
Length = 248
Score = 31.9 bits (69), Expect = 0.15
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIA 324
+R LL GPPGTGK+++ AIA
Sbjct: 31 KRGYLLYGPPGTGKSSLVAAIA 52
>At3g05780.1 68416.m00649 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 924
Score = 31.9 bits (69), Expect = 0.15
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +1
Query: 223 IVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELGTK 342
I V +R + + L+GPPG GKT+I +IA+ L K
Sbjct: 429 IAVGRLRGTSQGK-IICLSGPPGVGKTSIGRSIARALDRK 467
>At2g18193.1 68415.m02117 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 495
Score = 31.9 bits (69), Expect = 0.15
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
R K +R LL GPPGTGK+++ A+A L
Sbjct: 237 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 267
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 31.9 bits (69), Expect = 0.15
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
R K +R LL GPPGTGK+++ A+A L
Sbjct: 238 RVGKAWKRGYLLYGPPGTGKSSLIAAMANYL 268
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 31.9 bits (69), Expect = 0.15
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ +L GPPGTGKT +A A+A T F + GSE+
Sbjct: 203 KGVLCYGPPGTGKTLLARAVANR--TDACFIRVIGSEL 238
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 31.5 bits (68), Expect = 0.19
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 256 ARRALLLAGPPGTGKTAIALAIAQELG 336
+++A+LL+G PG GKT A ++Q LG
Sbjct: 392 SKKAVLLSGTPGIGKTTSAKLVSQMLG 418
>At5g16930.1 68418.m01984 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 644
Score = 31.5 bits (68), Expect = 0.19
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 6/44 (13%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELG------TKGPFCPMGGSEV 375
R +L GPPGTGKT A +A+ G T G P+G V
Sbjct: 399 RNILFYGPPGTGKTMAARELARRSGLDYALMTGGDVAPLGAQAV 442
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 31.5 bits (68), Expect = 0.19
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ ++L G PGTGKT +A A+A T F + GSE+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 258
>At4g25835.1 68417.m03716 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 506
Score = 31.5 bits (68), Expect = 0.19
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
R+ + +R LL GPPGTGK+++ A+A L
Sbjct: 231 RTGRAWKRGYLLYGPPGTGKSSMIAAMANYL 261
>At3g28600.1 68416.m03570 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 475
Score = 31.5 bits (68), Expect = 0.19
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 250 KMARRALLLAGPPGTGKTAIALAIAQEL 333
K +R LL GPPGTGK+ + A+A L
Sbjct: 233 KAWKRGYLLHGPPGTGKSTMIAAMANHL 260
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 31.5 bits (68), Expect = 0.19
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ ++L G PGTGKT +A A+A T F + GSE+
Sbjct: 223 KGVILYGEPGTGKTLLAKAVAN--STSATFLRVVGSEL 258
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 31.5 bits (68), Expect = 0.19
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFCPMGGSEV 375
+ +L GPPG+GKT +A A+A G F + GSE+
Sbjct: 240 KGVLCYGPPGSGKTLVARAVANRTG--ACFIRVVGSEL 275
>At1g15520.1 68414.m01867 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1423
Score = 31.5 bits (68), Expect = 0.19
Identities = 18/37 (48%), Positives = 24/37 (64%)
Frame = +1
Query: 223 IVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
I+ D+ K R ALLL GPP +GKT + LA+A +L
Sbjct: 169 ILNDVSGIVKPGRMALLL-GPPSSGKTTLLLALAGKL 204
>At5g17750.1 68418.m02081 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 392
Score = 31.1 bits (67), Expect = 0.25
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
R K +R+ L GPPGTGK+++ A+A L
Sbjct: 214 RVGKAWKRSYFLYGPPGTGKSSLVAAMANYL 244
>At4g15236.1 68417.m02335 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1388
Score = 31.1 bits (67), Expect = 0.25
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQEL 333
+R LL GPPG GKT + LA++ L
Sbjct: 162 KRMTLLLGPPGCGKTTLLLALSGRL 186
>At3g28510.1 68416.m03561 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 530
Score = 31.1 bits (67), Expect = 0.25
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQEL 333
+R LL GPPGTGK+ + AIA L
Sbjct: 243 KRGYLLFGPPGTGKSTMIAAIANFL 267
>At2g29940.1 68415.m03642 ABC transporter family protein similar to
ABC1 protein GI:14331118 from [Nicotiana
plumbaginifolia]
Length = 1426
Score = 31.1 bits (67), Expect = 0.25
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPG+GK+ + LA+A +L
Sbjct: 187 RMTLLLGPPGSGKSTLLLALAGKL 210
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1
RNA helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 30.7 bits (66), Expect = 0.34
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQELGTKG 345
L+ GPPGTGKT + AI + +G
Sbjct: 507 LIQGPPGTGKTVTSAAIVYHMAKQG 531
>At3g28520.1 68416.m03562 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 478
Score = 30.7 bits (66), Expect = 0.34
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQEL 333
+R LL GPPGTGK+ + AIA L
Sbjct: 228 KRGYLLFGPPGTGKSTMISAIANFL 252
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 30.7 bits (66), Expect = 0.34
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +1
Query: 226 VVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELGTK 342
V+ ++R+ ++++ +LL G PG GKT++ LA+ + G K
Sbjct: 1735 VLRVLRAMQLSK-PILLEGSPGVGKTSLILALGKYSGHK 1772
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 232 DMIRSKKMARRALLLAGPPGTGKTAIALAIAQELGTKGPFCPM 360
+M+ +R +LL GP G+GK+A+ +A E G F M
Sbjct: 344 EMVSLAVSQKRPVLLYGPSGSGKSALIRKLADESGNHVVFIHM 386
>At5g40010.1 68418.m04852 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 514
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 250 KMARRALLLAGPPGTGKTAIALAIAQEL 333
K +R LL GPPGTGK+ + A+A L
Sbjct: 240 KAWKRGYLLFGPPGTGKSTMIAAMANLL 267
>At3g28610.1 68416.m03571 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 473
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 250 KMARRALLLAGPPGTGKTAIALAIAQEL 333
K +R LL GPPGTGK+ + A+A L
Sbjct: 233 KAWKRGYLLYGPPGTGKSTMIAAMANLL 260
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 250 KMARRALLLAGPPGTGKTAIALAIAQEL 333
K +R LL GPPGTGK+ + A+A L
Sbjct: 237 KAWKRGYLLFGPPGTGKSTMIAAMANFL 264
>At3g28570.1 68416.m03567 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 451
Score = 30.3 bits (65), Expect = 0.44
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIA 324
R K +R LL GPPGTGK+ + A+A
Sbjct: 230 RIGKAWKRGYLLYGPPGTGKSTMIAAMA 257
>At3g16340.1 68416.m02066 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]; contains Pfam profile: PF00005 ABC
transporter
Length = 1416
Score = 30.3 bits (65), Expect = 0.44
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPP +GKT + LA+A +L
Sbjct: 174 RMTLLLGPPSSGKTTLLLALAGKL 197
>At1g66950.1 68414.m07612 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1454
Score = 30.3 bits (65), Expect = 0.44
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 202 SAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
S R+ I+ D+ K +R LLL GPP +GKT + A+A +L
Sbjct: 183 SKRKKIQILKDISGIVKPSRMTLLL-GPPSSGKTTLLQALAGKL 225
>At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1
nuclear gene encoding mitochondrial protein - Homo
sapiens, EMBL:AF026849 contains Pfam profile: ATPase
family PF00004
Length = 470
Score = 29.9 bits (64), Expect = 0.59
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 250 KMARRALLLAGPPGTGKTAIALAIAQEL 333
K +R LL GPPGTGK+ + A+A L
Sbjct: 238 KAWKRGYLLYGPPGTGKSTMISAMANLL 265
>At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1607
Score = 29.9 bits (64), Expect = 0.59
Identities = 19/59 (32%), Positives = 30/59 (50%)
Frame = +1
Query: 157 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
N + GLVG E+ E ++ + +K R + + G PG+GKT IA + Q+L
Sbjct: 258 NSTQSSASQGLVGMEAHMEKMKELLGLDSNKV---RLIGICGLPGSGKTTIAKRLYQQL 313
>At3g45450.1 68416.m04908 Clp amino terminal domain-containing
protein contains Pfam profile: PF02861 Clp amino
terminal domain
Length = 341
Score = 29.9 bits (64), Expect = 0.59
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 229 VDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELGT 339
V I +++ R L G PG GK AIA IAQ + +
Sbjct: 166 VVQILARRTCRNNACLIGKPGVGKRAIAEGIAQRIAS 202
>At4g19500.1 68417.m02868 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein. A false
intron was added between exons 2 and 3 to circumvent a
frameshift caused by a sequencing error, as per Blake
Meyers (bcmeyers@vegmail.ucdavis.edu)
Length = 1308
Score = 29.5 bits (63), Expect = 0.78
Identities = 18/49 (36%), Positives = 27/49 (55%)
Frame = +1
Query: 187 LVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
+VG E+ EA + +R K R + ++GP G GKT IA A+ +L
Sbjct: 183 IVGIEAHLEAMSSI---LRLKSEKARMVGISGPSGIGKTTIAKALFSKL 228
>At3g28540.1 68416.m03564 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 510
Score = 29.5 bits (63), Expect = 0.78
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQEL 333
+R LL GPPGTGK+ + A+A L
Sbjct: 239 KRGYLLFGPPGTGKSTMISAMANFL 263
>At5g66005.2 68418.m08311 Expressed protein
Length = 164
Score = 29.1 bits (62), Expect = 1.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGP 348
+ LL+ GPPG GKT + + + + P
Sbjct: 6 KCLLVTGPPGVGKTTLIMRVLDMMRVSNP 34
>At3g44400.1 68416.m04770 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1007
Score = 29.1 bits (62), Expect = 1.0
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Frame = +1
Query: 220 GIVVDMIRSKKMAR------RALLLAGPPGTGKTAIALAIAQELGTKGPF 351
G+ M R++++ R R + + GPPG GKT IA + + PF
Sbjct: 215 GMAAHMERTEQLLRLDLDEVRMIGILGPPGIGKTTIATCMFDRFSRRFPF 264
>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
II gene enhancer-binding protein)(RIPE3B-binding complex
3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
identical to putative helicase (atpc-2 gene) cDNA
NCBI_gi:11191230
Length = 639
Score = 29.1 bits (62), Expect = 1.0
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 232 DMIRSKKMARRALLLAGPPGTGKTAIALAIAQELGTKG 345
D I ++ LL GPPGTGKT + I + +G
Sbjct: 196 DAITKALSSKDVFLLHGPPGTGKTTTVVEIVLQEVKRG 233
>At1g77620.1 68414.m09037 expressed protein
Length = 1151
Score = 29.1 bits (62), Expect = 1.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQELGTK 342
+ LL+ GP G+GK+A A A+E G K
Sbjct: 385 KNVLLIVGPAGSGKSAAIHACAKEQGFK 412
>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 815
Score = 28.7 bits (61), Expect = 1.4
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 238 IRSKKMARRALLLAGPPGTGKTAIALAIAQELGTKGPF 351
++ K + ++++GPPG GKT + + + +G F
Sbjct: 182 LKKKLLDNSVVVVSGPPGCGKTTLVTKLCDDPEIEGEF 219
>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1038
Score = 28.7 bits (61), Expect = 1.4
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +1
Query: 280 GPPGTGKTAIALAIAQELGTKGPF-CPMG 363
GP G GKT IA A+ +L T F C MG
Sbjct: 212 GPAGIGKTTIARALYNQLSTNFQFKCFMG 240
>At5g37160.1 68418.m04461 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 871
Score = 28.7 bits (61), Expect = 1.4
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 202 SAREAAGIVVDMIRSKKMARRALLLAGPPGTGKT---AIALAIAQELGTKGPFC 354
S++EAA + R+ K L+ GPPGTGKT A L+ +L K C
Sbjct: 246 SSQEAAILGFLKTRNCKHKESVKLIWGPPGTGKTKTVATLLSTLMQLKCKTVVC 299
>At4g15233.1 68417.m02334 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1168
Score = 28.7 bits (61), Expect = 1.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQEL 333
+R LL GPP GKT + LA++ L
Sbjct: 164 KRMTLLLGPPSCGKTTLLLALSGRL 188
>At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101,
putative similar to heat shock protein 101 GI:6715468
GB:AAF26423 from [Arabidopsis thaliana]
Length = 623
Score = 28.7 bits (61), Expect = 1.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 187 LVGQESAREAAGIVVDMIR----SKKMARRALLLAGPPGTGKTAIALAIAQEL 333
+VGQ+ A +A + R + + L GP G GKT +A A+A++L
Sbjct: 536 VVGQDEAVKAVAAAILRSRVGLGRPQQPSGSFLFLGPTGVGKTELAKALAEQL 588
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
+L G PG GKTA+ +AQ +
Sbjct: 169 VLIGEPGVGKTAVVEGLAQRI 189
>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
subunit / ClpC almost identical to ClpC GI:2921158 from
[Arabidopsis thaliana]; contains Pfam profile PF02861:
Clp amino terminal domain; contains Pfam profile
PF00004: ATPase, AAA family; contains Pfam profile
PF02151: UvrB/uvrC motif
Length = 929
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 274 LAGPPGTGKTAIALAIAQELGT 339
L G PG GKTAIA +AQ + +
Sbjct: 300 LIGEPGVGKTAIAEGLAQRIAS 321
>At5g37140.1 68418.m04458 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 692
Score = 28.3 bits (60), Expect = 1.8
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 202 SAREAAGIVVDMIRSKKMARRALLLAGPPGTGKT 303
S++EAA + IR+ L+ GPPGTGKT
Sbjct: 76 SSQEAAILSCLKIRNCNHKHSVKLIWGPPGTGKT 109
>At5g20040.2 68418.m02385 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 459
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 202 SAREAAGIVVDMIRSKKMAR-RALLLAGPPGTGKTAIALAIAQEL 333
+A A + ++ + KK + + ++++GP G GK+ +A+ +A+ L
Sbjct: 30 AATTACSVPLNGNKKKKSEKEKVIVISGPTGAGKSRLAMELAKRL 74
>At5g20040.1 68418.m02384 tRNA isopentenyltransferase 9 / IPP
transferase 9 (IPT9) identical to tRNA
isopentenyltransferase (IPT9) [Arabidopsis thaliana]
GI:14279070
Length = 463
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/45 (26%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Frame = +1
Query: 202 SAREAAGIVVDMIRSKKMAR-RALLLAGPPGTGKTAIALAIAQEL 333
+A A + ++ + KK + + ++++GP G GK+ +A+ +A+ L
Sbjct: 30 AATTACSVPLNGNKKKKSEKEKVIVISGPTGAGKSRLAMELAKRL 74
>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1210
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPF 351
R + + GPPG GKT IA + ++ K F
Sbjct: 256 RMIGILGPPGIGKTTIARVLYDQISEKFQF 285
>At5g18350.1 68418.m02159 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1193
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R + + GPPG GKT IA A+ ++
Sbjct: 215 RMIGIVGPPGIGKTTIARALRDQI 238
>At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1)
identical to peroxisome biogenesis protein PEX1
[Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains
Pfam profile PF00004: ATPase, AAA family; identical to
cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA,
partial cds GI:12006271
Length = 1130
Score = 28.3 bits (60), Expect = 1.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQ 327
+L+ GPPG+GKT +A A A+
Sbjct: 596 ILIYGPPGSGKTILARAAAK 615
Score = 26.6 bits (56), Expect = 5.5
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIA 324
+S R +LL GPPG GKT I A A
Sbjct: 872 KSPLRLRSNVLLYGPPGCGKTHIVGAAA 899
>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
subunit (ClpC) identical to AtClpC GI:5360574 from
[Arabidopsis thaliana]; contains Pfam profiles PF02861:
Clp amino terminal domain and PF02151: UvrB/uvrC motif
Length = 952
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +1
Query: 274 LAGPPGTGKTAIALAIAQELGT 339
L G PG GKTAIA +AQ + +
Sbjct: 321 LIGEPGVGKTAIAEGLAQRIAS 342
>At3g24530.1 68416.m03080 AAA-type ATPase family protein / ankyrin
repeat family protein contains Pfam profiles: PF00023
ankyrin repeat, PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 481
Score = 28.3 bits (60), Expect = 1.8
Identities = 21/68 (30%), Positives = 31/68 (45%)
Frame = +1
Query: 142 LGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAI 321
+GL E ++ A + + R A G+ + R MA G PGTGKT +A +
Sbjct: 211 VGLSELKTQLRKWAKGMLLDERRRALGLNIGTRRPPHMA-----FLGNPGTGKTMVARVL 265
Query: 322 AQELGTKG 345
+ L T G
Sbjct: 266 GKLLNTVG 273
>At3g05790.1 68416.m00650 Lon protease, putative similar to Lon
protease homolog 2 SP:P93655
Length = 942
Score = 28.3 bits (60), Expect = 1.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTK 342
+ + L+GP G GKT+I +IA+ L K
Sbjct: 450 KIICLSGPTGVGKTSIGRSIARALDRK 476
>At2g36380.1 68415.m04464 ABC transporter family protein related to
multi drug resistance proteins and P-glycoproteins
Length = 1453
Score = 28.3 bits (60), Expect = 1.8
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 202 SAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
S + I+ D+ K +R LLL GPP +GKT + A+A +L
Sbjct: 181 SKKRKIEILKDISGIIKPSRMTLLL-GPPSSGKTTLLQALAGKL 223
>At1g35750.1 68414.m04445 pumilio/Puf RNA-binding domain-containing
protein
Length = 528
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Frame = -1
Query: 204 RLLTHETGCHLNR----NTIFIQPQAFYMTVSRDPLRFS 100
+L TH+ GC++ + NT+ +Q + +SRD LR S
Sbjct: 368 QLATHQYGCYVLQCSLINTVGLQHERLVAEISRDSLRLS 406
>At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing
protein contains similarity to (R)-specific enoyl-CoA
hydratase PhaJ1 [Pseudomonas oleovorans]
gi|22506675|gb|AAM97601; contains Pfam domain PF01575:
MaoC like domain
Length = 337
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQ 327
R LL+ G PGTGK+ A A+A+
Sbjct: 13 RPNLLITGTPGTGKSTTASALAE 35
>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
protein GI:497629, SP:P42762 from [Arabidopsis
thaliana]; contains Pfam profile PF02861: Clp amino
terminal domain
Length = 945
Score = 27.9 bits (59), Expect = 2.4
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +1
Query: 79 IEEVKSTAKTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRS--KK 252
+ V S Q+I+A + + L++ Q+ +VGQ+ A A V R K
Sbjct: 598 VASVWSGIPVQQITADERMLLMSLED-----QLRGRVVGQDEAVAAISRAVKRSRVGLKD 652
Query: 253 MAR--RALLLAGPPGTGKTAIALAIA 324
R A+L GP G GKT + A+A
Sbjct: 653 PDRPIAAMLFCGPTGVGKTELTKALA 678
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAI 321
+L+ GPPGTGKT L+I
Sbjct: 276 VLIQGPPGTGKTQTILSI 293
>At4g15215.1 68417.m02332 ABC transporter family protein similar to
PDR5-like ABC transporter [Spirodela polyrhiza]
GI:1514643; contains Pfam profile PF00005: ABC
transporter
Length = 1390
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPG GKT + A++ L
Sbjct: 165 RMTLLLGPPGCGKTTLLQALSGRL 188
>At2g46620.1 68415.m05815 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 491
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 241 RSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
R ++ +R+ LL GP GTGK++ A+A L
Sbjct: 225 RLGRVWKRSYLLYGPSGTGKSSFVAAMANFL 255
>At2g37280.1 68415.m04573 ABC transporter family protein similar to
PDR5-like ABC transporter GI:1514643 from [Spirodela
polyrhiza]
Length = 1413
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL GPPG GKT + A++ L
Sbjct: 166 RLTLLLGPPGCGKTTLLKALSGNL 189
>At2g34470.1 68415.m04231 urease accessory protein (UREG) identical
to urease accessory protein UREG GI:4324678 from
[Arabidopsis thaliana]; contains Pfam profile: PF01495
HypB/UreG nucleotide-binding domain
Length = 275
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 274 LAGPPGTGKTAIALAIAQELGTK 342
+ GP GTGKTA+ LA+ + L K
Sbjct: 78 IGGPVGTGKTALMLALCRFLRDK 100
>At2g07710.1 68415.m00998 hypothetical protein
Length = 150
Score = 27.9 bits (59), Expect = 2.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -3
Query: 214 PHVQTLDPRDRLPFE*EHHFHPTPSLLYDCEQRS 113
PH +LDP L + E H HP ++ DC+ +S
Sbjct: 84 PHHHSLDPS--LCHQVEFHHHPPLDIILDCQLQS 115
>At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical
to heat shock protein 101 GI:6715468 GB:AAF26423 from
[Arabidopsis thaliana]
Length = 911
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 265 ALLLAGPPGTGKTAIALAIAQEL 333
+ L GP G GKT +A A+A++L
Sbjct: 601 SFLFLGPTGVGKTELAKALAEQL 623
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
+L G PG GKTA+ +AQ +
Sbjct: 204 VLIGEPGVGKTAVVEGLAQRI 224
>At1g63880.1 68414.m07234 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1017
Score = 27.9 bits (59), Expect = 2.4
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 157 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAI 321
N P + G+VG E+ ++D+ + + + +AGP G GKT IA A+
Sbjct: 177 NATPSRDFDGMVGIEAHLREIKSLLDL---DNVEVKIVAIAGPAGIGKTTIARAL 228
>At1g16800.1 68414.m02018 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 1939
Score = 27.9 bits (59), Expect = 2.4
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
L+ GPPGTGKT +AI L
Sbjct: 1128 LIQGPPGTGKTRTIVAIISGL 1148
>At1g03030.1 68414.m00275 phosphoribulokinase/uridine kinase family
protein contains Pfam PF00485: Phosphoribulokinase /
Uridine kinase family; Belongs to Interpro IPR006083
Phosphoribulokinase/uridine kinase family; similar to
Uridine kinase (Uridine monophosphokinase) (SP:P27515)
{Saccharomyces cerevisiae}; ESTs gb|AA585719,
gb|AA728503 and gb|T22272 come from this gene
Length = 301
Score = 27.9 bits (59), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQELGTKGP 348
+R + LAGPPG GK+ +A + + + P
Sbjct: 95 KRLVGLAGPPGAGKSTVANEVVRRVNKLWP 124
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 27.5 bits (58), Expect = 3.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 244 SKKMARRALLLAGPPGTGKTAIALAIAQELGTKG 345
S++ R + + GP G GKT + +I EL TKG
Sbjct: 170 SEEEERGIIGVYGPGGVGKTTLMQSINNELITKG 203
>At4g16990.3 68417.m02563 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 801
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 166 PIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
P + VG E+ EA ++ M+R R + + GP TGKT I A+ L
Sbjct: 174 PSNNFSDFVGIEAHIEA---LISMLRFDSKKARMIGICGPSETGKTTIGRALYSRL 226
>At4g16990.2 68417.m02562 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 796
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 166 PIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
P + VG E+ EA ++ M+R R + + GP TGKT I A+ L
Sbjct: 174 PSNNFSDFVGIEAHIEA---LISMLRFDSKKARMIGICGPSETGKTTIGRALYSRL 226
>At4g16990.1 68417.m02561 disease resistance protein (TIR-NBS
class), putative domain signature TIR-NBS exists,
suggestive of a disease resistance protein.
Length = 520
Score = 27.5 bits (58), Expect = 3.1
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 166 PIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
P + VG E+ EA ++ M+R R + + GP TGKT I A+ L
Sbjct: 174 PSNNFSDFVGIEAHIEA---LISMLRFDSKKARMIGICGPSETGKTTIGRALYSRL 226
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = +1
Query: 211 EAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQ------ELGTKGPFC 354
E + I + R + + G PGTGKT L++ + E G+ P+C
Sbjct: 443 EITAFIKGSISDDQCLGRCMYIHGVPGTGKTISVLSVMKNLKAEVEAGSVSPYC 496
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 27.5 bits (58), Expect = 3.1
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Frame = +1
Query: 211 EAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL------GTKGPFC 354
E + I + R + + G PGTGKT L++ + L G+ P+C
Sbjct: 448 EITSFIKGSISDDQCLGRCMYIHGVPGTGKTISVLSVMKNLKAEVEEGSVSPYC 501
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R +LL G PGTGKT + A+ L
Sbjct: 754 RGILLHGHPGTGKTLVVRALIGSL 777
>At2g25140.1 68415.m03007 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 964
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
++ G PG GKTAIA +AQ +
Sbjct: 284 VIIGEPGVGKTAIAEGLAQRI 304
>At1g04730.1 68414.m00469 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 954
Score = 27.5 bits (58), Expect = 3.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAIALAIAQELG 336
++ LLL G PG GKT +A A+ G
Sbjct: 345 QKILLLCGAPGLGKTTLAHIAAKHCG 370
>At5g43140.1 68418.m05266 peroxisomal membrane 22 kDa family protein
contains Mpv17 / PMP22 family domain, Pfam:PF04117
Length = 254
Score = 27.1 bits (57), Expect = 4.1
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +1
Query: 169 IQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGP 285
I MAA L Q E G D+IR+ +MA L+ GP
Sbjct: 101 IYMAADLTSQMITMEPTGSF-DLIRTARMASFGLIFLGP 138
>At5g15450.1 68418.m01808 heat shock protein 100, putative / HSP100,
putative / heat shock protein clpB, putative /
HSP100/ClpB, putative similar to HSP100/ClpB GI:9651530
[Phaseolus lunatus]
Length = 968
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
+L G PG GKTAI+ +AQ +
Sbjct: 279 VLIGEPGVGKTAISEGLAQRI 299
>At4g15230.1 68417.m02333 ABC transporter family protein similar to
pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, PDR5-like ABC transporter
[Spirodela polyrhiza] GI:1514643; contains Pfam profile
PF00005: ABC transporter
Length = 1326
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIA 324
R LL GPPG GKT + A++
Sbjct: 168 RMTLLLGPPGCGKTTLLQALS 188
>At3g53480.1 68416.m05904 ABC transporter family protein PDR5-like
ABC transporter, Spirodela polyrrhiza, EMBL:Z70524
Length = 1450
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +1
Query: 187 LVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
L G ++ I+ D+ K R LLL GPP GKT + A++ L
Sbjct: 177 LTGAKTHEAKINIINDVNGIIKPGRLTLLL-GPPSCGKTTLLKALSGNL 224
>At3g29800.1 68416.m03792 AAA-type ATPase family contains Pfam
profile: ATPase family PF00004
Length = 440
Score = 27.1 bits (57), Expect = 4.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQEL 333
R LL G PG GKT++ AIA+ L
Sbjct: 200 RYYLLHGLPGAGKTSLVAAIAKYL 223
>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +1
Query: 190 VGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELG 336
+G +ARE+ ++ + + M + G GTG + IA+ +G
Sbjct: 186 IGMNAARESKEVIEEALYGSDMVFVTAGMGGGTGTGAAPVIAGIAKAMG 234
>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/49 (24%), Positives = 23/49 (46%)
Frame = +1
Query: 190 VGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELG 336
+G +ARE+ ++ + + M + G GTG + IA+ +G
Sbjct: 186 IGMNAARESKEVIEEALYGSDMVFVTAGMGGGTGTGAAPVIAGIAKAMG 234
>At2g14080.1 68415.m01566 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1215
Score = 27.1 bits (57), Expect = 4.1
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 157 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELG 336
N P++ GLVG + E +++ + + R + + GPPG GKT I + +L
Sbjct: 220 NSTPLRDFDGLVGMGAHMEKLELLLCLDSCEV---RMIGIWGPPGIGKTTIVRFLYNQLS 276
Query: 337 T 339
+
Sbjct: 277 S 277
>At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1031
Score = 27.1 bits (57), Expect = 4.1
Identities = 18/62 (29%), Positives = 29/62 (46%)
Frame = +1
Query: 157 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELG 336
N P + G+VG E+ ++D+ + + ++GP G GKT IA A+ L
Sbjct: 180 NATPSRDFNGMVGLEAHLTEMESLLDLDYD---GVKMVGISGPAGIGKTTIARALQSRLS 236
Query: 337 TK 342
K
Sbjct: 237 NK 238
>At5g66900.1 68418.m08433 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 809
Score = 26.6 bits (56), Expect = 5.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 268 LLLAGPPGTGKTAIALAIAQELGTKGPF 351
L+++ PPG GKT + + + KG F
Sbjct: 190 LVVSAPPGCGKTTLVSRLCDDPDIKGKF 217
>At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding
subunit ClpX1 (CLPX) identical to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]
Length = 579
Score = 26.6 bits (56), Expect = 5.5
Identities = 19/75 (25%), Positives = 39/75 (52%)
Frame = +1
Query: 103 KTQRISAHSHIKGLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAG 282
K ++ ++H K + + + + +AG +A+ A +V++ +S +LL G
Sbjct: 180 KVLSVAVYNHYKRIYHESSQ---KRSAGETDSTAAKPADDDMVELEKSN------ILLMG 230
Query: 283 PPGTGKTAIALAIAQ 327
P G+GKT +A +A+
Sbjct: 231 PTGSGKTLLAKTLAR 245
>At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding
subunit ClpX, putative similar to CLP protease
regulatory subunit CLPX GI:2674203 from [Arabidopsis
thaliana]; non-consensus splice donor GC at exon 4;
non-consensus splice donor AA at exon 7
Length = 606
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 232 DMIRSKKMARRALLLAGPPGTGKTAIALAIAQ 327
D I ++ + +LL GP G+GKT +A +A+
Sbjct: 253 DNIDHVELDKSNVLLLGPTGSGKTLLAKTLAR 284
>At5g11250.1 68418.m01314 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1189
Score = 26.6 bits (56), Expect = 5.5
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +1
Query: 157 NGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
N P + GLVG + E ++ + + R + + GPPG GKT IA + +L
Sbjct: 226 NSTPSRDFDGLVGMRAHLEKMKPLLCLDTDEV---RIIGIWGPPGIGKTTIARVVYNQL 281
>At3g30842.1 68416.m03968 ABC transporter protein, putative similar
to pleiotropic drug resistance like protein [Nicotiana
tabacum] GI:20522008, ABC1 protein [Nicotiana
plumbaginifolia] GI:14331118; contains Pfam profile
PF00005: ABC transporter
Length = 1406
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGT 339
R LL GPPG+GK+ + A++ + T
Sbjct: 173 RLTLLLGPPGSGKSTLLKALSGKTET 198
>At2g38770.1 68415.m04760 expressed protein
Length = 1509
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 271 LLAGPPGTGKTAIALAIAQEL 333
++ GPPGTGKT A+ I L
Sbjct: 884 MVVGPPGTGKTDTAVQILNVL 904
>At1g55700.1 68414.m06378 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 679
Score = 26.6 bits (56), Expect = 5.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 225 YPCSLTCRLLTHETGCHLNRNTIFIQPQAFYMTVSR 118
Y C+ C + H C L N IF++P +FY+ R
Sbjct: 595 YTCNDYCNVTVH-VSCLLG-NPIFLKPTSFYIKQKR 628
>At1g33290.2 68414.m04118 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 303
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 229 VDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
+DM+ +++L G PG GKT + IA+ L
Sbjct: 154 IDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVL 188
>At1g33290.1 68414.m04117 sporulation protein-related isoform
contains non-consensus AT-donor acceptor site at intron
6; similar to Stage III sporulation protein AA.
(Swiss-Prot:Q01367) [Bacillus subtilis]; similar to
SpoIIIAA (GI:1303904) [Bacillus subtilis]; similar to
stage III sporulation protein AA (GI:18145497)
[Clostridium perfringens str. 13]
Length = 379
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 229 VDMIRSKKMARRALLLAGPPGTGKTAIALAIAQEL 333
+DM+ +++L G PG GKT + IA+ L
Sbjct: 154 IDMLYDLLHYGKSILFVGRPGVGKTTVLREIARVL 188
>At5g64150.1 68418.m08055 methylase family protein contains TIGRfam
TIGR00536: modification methylase, HemK family
Length = 377
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 289 GTGKTAIALAIAQELGTKG 345
GTG AIA+ IA+ LG++G
Sbjct: 208 GTGSGAIAIGIAKVLGSRG 226
>At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1187
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +1
Query: 226 VVDMIRSKKMARRALLLAGPPGTGKTAIALAIAQELGT 339
+ +M+ + + R + + G PG GKT +A A+ ++ +
Sbjct: 161 IENMVNKQPIGIRCVGIWGMPGIGKTTLAKAVFDQMSS 198
>At5g35970.1 68418.m04332 DNA-binding protein, putative similar to
SWISS-PROT:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2, SMUBP-2)
[Mesocricetus auratus]
Length = 961
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 259 RRALLLAGPPGTGKTAI 309
R +++ GPPGTGKT +
Sbjct: 503 RPVMIVQGPPGTGKTGM 519
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +1
Query: 250 KMARRALLLAGPPGTGKTAIALAIAQELG 336
K R L+ GP G+GK+++ AIA LG
Sbjct: 40 KPGSRLNLVIGPNGSGKSSLVCAIALCLG 68
>At4g31780.2 68417.m04510 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative similar to MGD synthase type A from
Arabidopsis thaliana [gi:9927297], similar to
monogalactosyldiacylglycerol synthase, Cucumis sativus,
PID:g1805254
Length = 533
Score = 26.2 bits (55), Expect = 7.2
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +1
Query: 139 GLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALA 318
GL DENG+ G++G+E G+ D R KK+ L+L G G A A A
Sbjct: 109 GLSSDENGIRENGTGGVLGEEGL-PLNGVEAD--RPKKV----LILMSDTGGGHRASAEA 161
Query: 319 I 321
I
Sbjct: 162 I 162
>At4g31780.1 68417.m04509 1,2-diacylglycerol
3-beta-galactosyltransferase, putative /
monogalactosyldiacylglycerol synthase, putative / MGDG
synthase, putative similar to MGD synthase type A from
Arabidopsis thaliana [gi:9927297], similar to
monogalactosyldiacylglycerol synthase, Cucumis sativus,
PID:g1805254
Length = 504
Score = 26.2 bits (55), Expect = 7.2
Identities = 22/61 (36%), Positives = 29/61 (47%)
Frame = +1
Query: 139 GLGLDENGVPIQMAAGLVGQESAREAAGIVVDMIRSKKMARRALLLAGPPGTGKTAIALA 318
GL DENG+ G++G+E G+ D R KK+ L+L G G A A A
Sbjct: 109 GLSSDENGIRENGTGGVLGEEGL-PLNGVEAD--RPKKV----LILMSDTGGGHRASAEA 161
Query: 319 I 321
I
Sbjct: 162 I 162
>At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain
Length = 658
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -1
Query: 288 RRPCQE*SSPGHFLTSYHIDNYPCSLTCRLLTHETGCHLN 169
RR C + PG+ TS + C + R + G HLN
Sbjct: 261 RRRCLDFEMPGNKQTSSENNTAACESSSRCVVPSIGLHLN 300
>At5g40910.1 68418.m04967 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Non-consensus TT donor splice site at exon 1
Length = 1104
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +1
Query: 280 GPPGTGKTAIALAIAQELGT 339
GP G GKT IA A+ +L T
Sbjct: 213 GPAGIGKTTIARALFNQLST 232
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -3
Query: 295 QYQEALPRVKLAGPFSY 245
+Y+E +P++KLAGP S+
Sbjct: 210 RYKEIVPQLKLAGPTSF 226
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -3
Query: 295 QYQEALPRVKLAGPFSY 245
+Y+E +P++KLAGP S+
Sbjct: 210 RYKEIVPQLKLAGPTSF 226
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -3
Query: 295 QYQEALPRVKLAGPFSY 245
+Y+E +P++KLAGP S+
Sbjct: 210 RYKEIVPQLKLAGPTSF 226
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -3
Query: 295 QYQEALPRVKLAGPFSY 245
+Y+E +P++KLAGP S+
Sbjct: 210 RYKEIVPQLKLAGPTSF 226
>At4g14790.1 68417.m02274 ATP-dependent RNA helicase, mitochondrial
(SUV3) identical to mitochondrial RNA helicase
[Arabidopsis thaliana] GI:5823579; contains Pfam profile
PF00271: Helicase conserved C-terminal domain
Length = 571
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 244 SKKMARRALLLAGPPGTGKTAIALAIAQELGTKGPFC 354
++K R+ +L GP +GKT AL ++ + G +C
Sbjct: 84 ARKKKRKVILHVGPTNSGKTYSALKHLEQ-SSSGVYC 119
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 25.8 bits (54), Expect = 9.6
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = -3
Query: 295 QYQEALPRVKLAGPFSY 245
+Y+E +P++KLAGP S+
Sbjct: 244 RYREIVPQLKLAGPTSF 260
>At2g19490.1 68415.m02278 recA family protein contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 430
Score = 25.8 bits (54), Expect = 9.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 262 RALLLAGPPGTGKTAIALAIAQELGTKGPFC 354
R + + GP +GKT +AL + E +G C
Sbjct: 113 RVVEIYGPEASGKTTLALHVIAEAQKQGGTC 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.134 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,178,824
Number of Sequences: 28952
Number of extensions: 159412
Number of successful extensions: 731
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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