Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0144
         (592 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D5601E Cluster: PREDICTED: similar to CG3662-PA,...    42   0.011
UniRef50_Q7PVX7 Cluster: ENSANGP00000021507; n=3; Culicidae|Rep:...    38   0.13 
UniRef50_UPI0000DB797E Cluster: PREDICTED: similar to CG3662-PA,...    37   0.31 
UniRef50_Q9VPT9 Cluster: CG3662-PA, isoform A; n=4; Sophophora|R...    35   1.2  
UniRef50_A2Q7C5 Cluster: Induction: priB transcript was abundant...    35   1.2  
UniRef50_Q1EUL5 Cluster: ABC transporter related; n=1; Clostridi...    33   6.6  
UniRef50_Q2HGP4 Cluster: Putative uncharacterized protein; n=1; ...    33   6.6  
UniRef50_O93845 Cluster: DNA polymerase epsilon catalytic subuni...    33   6.6  

>UniRef50_UPI0000D5601E Cluster: PREDICTED: similar to CG3662-PA,
           isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to CG3662-PA, isoform A - Tribolium castaneum
          Length = 312

 Score = 41.9 bits (94), Expect = 0.011
 Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
 Frame = +3

Query: 75  MTVFTKPSLNAHKPEAIADQLCEDELIDM---HNIEGP-----YIM---RKRSATMLVCM 221
           MT+ TKP ++  K + +A  +  D+L       ++EG      ++    R+ S    +C+
Sbjct: 1   MTILTKP-ISGEKKDKLAPLVQNDQLASAPPTEDVEGQPSDVVFLKARARRVSTATTLCL 59

Query: 222 FLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGFCTIPISTRDSQLM 362
            L +L+V +  I  G  LY QY+    +RR+ G+  IP+ + D + +
Sbjct: 60  ILTSLIVVSIGIFVGKSLYNQYIS-AQMRRFTGYAQIPMPSEDVETL 105



 Score = 36.7 bits (81), Expect = 0.41
 Identities = 17/25 (68%), Positives = 19/25 (76%), Gaps = 2/25 (8%)
 Frame = +1

Query: 523 GRRIHFIHDFQTNTTGIIDL--DRC 591
           GR   FIHDF TNTTGIID+  +RC
Sbjct: 171 GRSGRFIHDFNTNTTGIIDITGNRC 195


>UniRef50_Q7PVX7 Cluster: ENSANGP00000021507; n=3; Culicidae|Rep:
           ENSANGP00000021507 - Anopheles gambiae str. PEST
          Length = 233

 Score = 38.3 bits (85), Expect = 0.13
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +3

Query: 219 MFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGFCTIPISTRDSQLMEPNFRTM 383
           + L+AL+  +    GG+  YRQY +     RY GFC IP    D+   E  +R+M
Sbjct: 2   LLLVALLGFSMGTIGGLFYYRQYAQARNHMRYHGFCKIPY---DASNFESLYRSM 53


>UniRef50_UPI0000DB797E Cluster: PREDICTED: similar to CG3662-PA,
           isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
           to CG3662-PA, isoform A - Apis mellifera
          Length = 337

 Score = 37.1 bits (82), Expect = 0.31
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
 Frame = +3

Query: 165 NIEGPYIMRKRS-----ATMLVCMFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGFCT 329
           ++ G Y + KRS      T    +FL+AL++    + GG+ +YRQY R    +   G+ +
Sbjct: 42  DVGGHYFVSKRSIYRIHVTATFLLFLVALMILIIGVIGGLYIYRQYARTQMHKFKTGWYS 101

Query: 330 IP 335
           IP
Sbjct: 102 IP 103



 Score = 34.3 bits (75), Expect = 2.2
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = +1

Query: 523 GRRIHFIHDFQTNTTGIIDLD 585
           GR+  FIHDF  N TGIID+D
Sbjct: 179 GRQGRFIHDFSINKTGIIDID 199


>UniRef50_Q9VPT9 Cluster: CG3662-PA, isoform A; n=4; Sophophora|Rep:
           CG3662-PA, isoform A - Drosophila melanogaster (Fruit
           fly)
          Length = 319

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 219 MFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGFCTIP 335
           +FL+A+VV    + GG  LYR Y    +  RY   C IP
Sbjct: 66  LFLIAVVVMLLGVLGGWTLYRVYAPSHSSMRYHALCEIP 104


>UniRef50_A2Q7C5 Cluster: Induction: priB transcript was abundant in
           primordia; n=5; Pezizomycotina|Rep: Induction: priB
           transcript was abundant in primordia - Aspergillus niger
          Length = 734

 Score = 35.1 bits (77), Expect = 1.2
 Identities = 26/91 (28%), Positives = 38/91 (41%)
 Frame = +3

Query: 174 GPYIMRKRSATMLVCMFLMALVVAATSIAGGVLLYRQYVRIGTVRRYQGFCTIPISTRDS 353
           G     +  A++L   FL ALV  A   AG   L  +   +       G+C +   T+ S
Sbjct: 614 GATTRHRNGASVLYGRFLRALVRRAPVSAGSQNLKVETGPLQPPPDLDGYCPVASGTQPS 673

Query: 354 QLMEPNFRTMPLRWSNEPDVQIVSTLNEAAT 446
            +        PLR+S   D QI+  +N A T
Sbjct: 674 SIPTSFIWPEPLRFSAMSDDQIIDAVNRAGT 704


>UniRef50_Q1EUL5 Cluster: ABC transporter related; n=1; Clostridium
           oremlandii OhILAs|Rep: ABC transporter related -
           Clostridium oremlandii OhILAs
          Length = 615

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 306 RRYQGFCTIPISTRDSQLMEPNFRTMPLRWSNEPD 410
           ++YQG  T+PI  RD    E  FR +  R+ N PD
Sbjct: 353 KKYQG--TLPIEKRDDNEYELEFRNVSFRYPNSPD 385


>UniRef50_Q2HGP4 Cluster: Putative uncharacterized protein; n=1;
            Chaetomium globosum|Rep: Putative uncharacterized protein
            - Chaetomium globosum (Soil fungus)
          Length = 1793

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = +3

Query: 84   FTKPSLNAHKPEAIADQLCEDELIDMHNIEGPYIMRKRSATMLVCMFLMALVVAATSI 257
            F  PS+ A + +    Q+  + L ++H +  PY +R+  A +L  +  MA ++   S+
Sbjct: 1024 FINPSVRAERLDEQFAQITSENLPELHRLIRPYFLRRTKAEVLTFLPPMAQIILPVSM 1081


>UniRef50_O93845 Cluster: DNA polymerase epsilon catalytic subunit
           A; n=2; Trichocomaceae|Rep: DNA polymerase epsilon
           catalytic subunit A - Emericella nidulans (Aspergillus
           nidulans)
          Length = 2207

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
 Frame = +2

Query: 272 LVPSVRENRHRTTIPGFLYH---THFY*GLAINGTKLPHNASSLVQRA*CADCEHFKRGR 442
           L+  +REN HR  +P F+YH      Y  + I     P    SL+Q + CA C+  + G+
Sbjct: 589 LLTDLRENPHRNEVP-FIYHLDVASMYPNIMITNRLQP---DSLIQESNCAACDFNRPGK 644


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,483,324
Number of Sequences: 1657284
Number of extensions: 12151202
Number of successful extensions: 29007
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29004
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)