Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0144
(592 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical p... 28 4.3
Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical pr... 28 5.7
U70852-15|AAK29824.1| 543|Caenorhabditis elegans Hypothetical p... 28 5.7
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ... 28 5.7
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein. 28 5.7
AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein. 28 5.7
AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical ... 28 5.7
Z68879-3|CAA93084.1| 532|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 27 10.0
>Z99281-48|CAE18025.2| 661|Caenorhabditis elegans Hypothetical
protein Y57G11C.42 protein.
Length = 661
Score = 28.3 bits (60), Expect = 4.3
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 351 SQLMEPNFRTMPLRWSNEPDVQIVSTLNEAATDQLITALREELDIGETVEKISVIDNGPP 530
S+L + + T P W N PDV+ S L + T + +GE K +D+G
Sbjct: 343 SRLYKNRYVTPPKSW-NRPDVRKTSPLRIRKKNFATTKIHITPFMGELARKRRKLDSGSS 401
Query: 531 HSF 539
H +
Sbjct: 402 HEW 404
>Z67884-5|CAA91810.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 141 EDELIDMHNIEGPYIMRKRSATMLVCM 221
ED++ +HN+ GP+++R+ A +L M
Sbjct: 830 EDQIEKLHNLLGPHMLRRLKADVLTGM 856
>Z67881-4|CAA91798.1| 1787|Caenorhabditis elegans Hypothetical
protein T14G8.1 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 141 EDELIDMHNIEGPYIMRKRSATMLVCM 221
ED++ +HN+ GP+++R+ A +L M
Sbjct: 830 EDQIEKLHNLLGPHMLRRLKADVLTGM 856
>U70852-15|AAK29824.1| 543|Caenorhabditis elegans Hypothetical
protein F45E4.11 protein.
Length = 543
Score = 27.9 bits (59), Expect = 5.7
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +3
Query: 93 PSLNAHKPEAIADQLCEDELIDMHNIEGPYIMRKRSATMLVCMFLMALVVAATSIA 260
PS N AD +DE H++ P MR A ML C F+ L ++++++A
Sbjct: 36 PSTNNGSTSMAADDQSQDEEHSAHSVLFP-SMRLMLAAMLCCCFI-TLSISSSNLA 89
>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
protein.
Length = 1829
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 141 EDELIDMHNIEGPYIMRKRSATMLVCM 221
ED++ +HN+ GP+++R+ A +L M
Sbjct: 816 EDQIEKLHNLLGPHMLRRLKADVLTGM 842
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 188 EEAFRYYASVYVPHGVSGGRDQHCRWRALVPSVRENRHRTTIPG 319
E+ FR YAS+++ H G D H + VP RE +R + G
Sbjct: 1339 EKVFRAYASLFMRHLCEPGADGHDTFNDGVP--REGLNRQHVLG 1380
>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
Length = 1829
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 141 EDELIDMHNIEGPYIMRKRSATMLVCM 221
ED++ +HN+ GP+++R+ A +L M
Sbjct: 816 EDQIEKLHNLLGPHMLRRLKADVLTGM 842
Score = 27.1 bits (57), Expect = 10.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +2
Query: 188 EEAFRYYASVYVPHGVSGGRDQHCRWRALVPSVRENRHRTTIPG 319
E+ FR YAS+++ H G D H + VP RE +R + G
Sbjct: 1339 EKVFRAYASLFMRHLCEPGADGHDTFNDGVP--REGLNRQHVLG 1380
>AF308444-1|AAG29837.1| 1787|Caenorhabditis elegans CHD-3 protein.
Length = 1787
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 141 EDELIDMHNIEGPYIMRKRSATMLVCM 221
ED++ +HN+ GP+++R+ A +L M
Sbjct: 830 EDQIEKLHNLLGPHMLRRLKADVLTGM 856
>AF025468-4|AAB71045.1| 449|Caenorhabditis elegans Hypothetical
protein T27A1.5 protein.
Length = 449
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 339 KWVWYRNPGIVVRCRFSRTDGTRARHLQ 256
KWVW RN G++ T GT A +Q
Sbjct: 412 KWVWIRNIGLMAFAMVGFTTGTYASMVQ 439
>Z68879-3|CAA93084.1| 532|Caenorhabditis elegans Hypothetical
protein K08F4.4 protein.
Length = 532
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = +3
Query: 423 STLNEAATDQLITALREELDI 485
S+L EA TD+LI +RE++DI
Sbjct: 444 SSLLEADTDELIRQIREDIDI 464
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 27.1 bits (57), Expect = 10.0
Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 420 VSTLNEAATDQLITALREELDIGETVEKISVI-DNG 524
+ T++ +D+L+ + +D+ +EK+SVI DNG
Sbjct: 42 MQTVHSGLSDELLFCKSKNVDMRSEIEKLSVIRDNG 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,694,239
Number of Sequences: 27780
Number of extensions: 284406
Number of successful extensions: 651
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -