Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0144
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   3.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   3.9  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   6.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 350  VPSRNGYGTETLVSSYGADSHVLTVQEH 267
            VP  N   T T VSS  ++ H   + EH
Sbjct: 1306 VPGNNLIATNTTVSSGSSEDHRRPLSEH 1333


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 490 RPSKRSLSLTMGRRIHFIHDFQTNTTGIIDL 582
           R +  ++ L M + +  IHD  T  +  IDL
Sbjct: 309 RETGATVPLHMQKYVQMIHDLHTRISTAIDL 339


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 490 RPSKRSLSLTMGRRIHFIHDFQTNTTGIIDL 582
           R +  ++ L M + +  IHD  T  +  IDL
Sbjct: 309 RETGATVPLHMQKYVQMIHDLHTRISTAIDL 339


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 79  PFSRSPVSTLTSLRPLP 129
           PF++ P+  L   +PLP
Sbjct: 66  PFAKPPIGPLRFRKPLP 82


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 79  PFSRSPVSTLTSLRPLP 129
           PF++ P+  L   +PLP
Sbjct: 66  PFAKPPIGPLRFRKPLP 82


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,283
Number of Sequences: 438
Number of extensions: 3848
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)