Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0137
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   6.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   6.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.0  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.0  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.0  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 376 LSNDFIYMGSVRHKYMCTIERKLYLEIS 293
           LSN++ Y  +   K  C   RKLY  I+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYRKLYYNIN 112


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 376 LSNDFIYMGSVRHKYMCTIERKLYLEIS 293
           LSN++ Y  +   K  C   +KLY  I+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKLYYNIN 112


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 376 LSNDFIYMGSVRHKYMCTIERKLYLEIS 293
           LSN++ Y  +   K  C   +KLY  I+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKLYYNIN 112


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 358 YMGSVRHKYMCTIER 314
           Y   VR KY CT+E+
Sbjct: 407 YSRDVRPKYDCTLEK 421


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 358 YMGSVRHKYMCTIER 314
           Y   VR KY CT+E+
Sbjct: 407 YSRDVRPKYDCTLEK 421


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 358 YMGSVRHKYMCTIER 314
           Y   VR KY CT+E+
Sbjct: 407 YSRDVRPKYDCTLEK 421


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,289
Number of Sequences: 438
Number of extensions: 3416
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)