Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0136
         (484 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: L...    43   0.003
UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-...    38   0.12 
UniRef50_Q98NJ2 Cluster: Mll0115 protein; n=1; Mesorhizobium lot...    32   5.9  

>UniRef50_Q0VJV2 Cluster: Like moricin; n=3; Manduca sexta|Rep: Like
           moricin - Manduca sexta (Tobacco hawkmoth) (Tobacco
           hornworm)
          Length = 248

 Score = 43.2 bits (97), Expect = 0.003
 Identities = 19/31 (61%), Positives = 21/31 (67%)
 Frame = -2

Query: 252 MGDGNHSPSREPYARLPTRAMTKNVLILGFI 160
           MGDGNHSPS  PYA LPTRA  K   +  F+
Sbjct: 1   MGDGNHSPSGRPYASLPTRAKMKLTSLFIFV 31


>UniRef50_Q6UV17 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=25; Arthropoda|Rep: Endonuclease and reverse
            transcriptase-like protein - Bombyx mori (Silk moth)
          Length = 986

 Score = 37.9 bits (84), Expect = 0.12
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = -1

Query: 301  LAVEQRLGSAPGIAEVHGRR 242
            L+  QRLGSAPGIAEVHGRR
Sbjct: 967  LSGRQRLGSAPGIAEVHGRR 986


>UniRef50_Q98NJ2 Cluster: Mll0115 protein; n=1; Mesorhizobium
           loti|Rep: Mll0115 protein - Rhizobium loti
           (Mesorhizobium loti)
          Length = 301

 Score = 32.3 bits (70), Expect = 5.9
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 207 DEHMAHVMASGYRRPWTSAMPGAEPSR 287
           D  +AH  A+G  RPW    P AEPSR
Sbjct: 96  DALLAHYRAAGISRPWFYVNPHAEPSR 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 445,415,077
Number of Sequences: 1657284
Number of extensions: 7581559
Number of successful extensions: 13341
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 13127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13341
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)