Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0136
         (484 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                 28   4.6  
SB_56750| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  

>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 583

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +2

Query: 284 PLLNR*SLSKAFFLSYTYILCLTDPI*IKSFESIKQYAPFLI 409
           P L+  ++ KA FL+Y     L+  +  KS    + Y+PFLI
Sbjct: 298 PFLSHDAIYKALFLAYPCSPFLSHDVIYKSLFLSRAYSPFLI 339


>SB_56750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +2

Query: 155 SFIKPKIKTFFVIALVGRRAYGSRD-GEWLPSPM 253
           S+IK ++K  FVI  +  + YG  D GEW+   M
Sbjct: 58  SWIKLELKRKFVITGIATQGYGDPDVGEWVKQYM 91


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,948,481
Number of Sequences: 59808
Number of extensions: 234984
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)