Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0136
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell l...    27   5.4  
AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.     27   5.4  

>U28730-7|AAA68258.2|  665|Caenorhabditis elegans Abnormal cell
           lineage protein 23 protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 402 KGAYCLMLSNDFIYMGSVRHRIYVYDRK 319
           KG YCL   +D I  G   + I ++DRK
Sbjct: 223 KGVYCLQYDDDKIVSGLRDNTIKIWDRK 250


>AF275253-1|AAG28037.1|  665|Caenorhabditis elegans LIN-23 protein.
          Length = 665

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -2

Query: 402 KGAYCLMLSNDFIYMGSVRHRIYVYDRK 319
           KG YCL   +D I  G   + I ++DRK
Sbjct: 223 KGVYCLQYDDDKIVSGLRDNTIKIWDRK 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,408,280
Number of Sequences: 27780
Number of extensions: 187461
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)