Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0134
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.68
SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|... 29 0.68
SPBC336.12c |cdc10||MBF transcription factor complex subunit Cdc... 27 2.1
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 27 2.1
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 26 4.8
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 26 4.8
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 4.8
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 4.8
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 26 6.3
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.3
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 0.68
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +2
Query: 389 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSA 559
AK S D K + K + A+ PE SK V+ KEE S +++E S+ +
Sbjct: 41 AKQSSKTDVSPKKSK-KEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96
>SPBC16G5.10 |||exosome subunit Rrp42 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 29.1 bits (62), Expect = 0.68
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +3
Query: 498 LKFQKKKNLVLLMQKVLLTQLPSFPNMVKKIDLAPTVKSDAAAVPEIKTPEAAD 659
LKF K ++ + V++ + N++ + LA + +P+I TP D
Sbjct: 117 LKFTPSKAWIIHVDAVVILSSSPYENILSALSLAAYLALQTTRLPKISTPNVTD 170
>SPBC336.12c |cdc10||MBF transcription factor complex subunit
Cdc10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 434 IKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAII 568
I VE QPEDSK T+V +S +EK + + S D A +
Sbjct: 525 IFVENALKQPEDSKQTKVSLMSENLSSKEKTAVPPRQKSRDIIASV 570
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +3
Query: 444 KNQLLSLKIQKLKYKLPSLKFQKKKNL 524
KN LLS KI + Y+ S+++QK KN+
Sbjct: 40 KNGLLSPKITQRFYQNSSIQYQKDKNI 66
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 328 VFWGYIVLFGLWYSGYLVVTNW 263
VFW +IVL GL+Y Y V ++
Sbjct: 356 VFWIWIVLPGLYYQNYWQVAHF 377
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.2 bits (55), Expect = 4.8
Identities = 20/76 (26%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Frame = +2
Query: 401 EIPDAEAKSADIKVE---EPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 571
E+P +A +A E E + + E++++E + V++ S+ E S +++E ++S
Sbjct: 68 EVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESESESESESESEEESESE---E 124
Query: 572 QHGEEDRLG--SYCKK 613
+ E +R G S+ KK
Sbjct: 125 ESDESERSGPSSFLKK 140
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 470 SKTEVQ-ATVAEISKEEKPSATDAEGSADSAAIIPQHGEEDR 592
SK + Q A VA I EEK ++ EG+ A + P+ + +R
Sbjct: 199 SKEDAQHARVAHIPIEEKQEDSEKEGNIKEAFVPPKFDQPER 240
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 410 DAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADS 556
D + I E PA + K + + + S E+PS T EG+ D+
Sbjct: 601 DEYQRQLHIDFENPAVSASE-KLSTEEIIPQESNFEEPSTTKKEGNVDT 648
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.8 bits (54), Expect = 6.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +2
Query: 416 EAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSAD 553
++K + KVEE ++ D K + ++ KEEK TD++ +AD
Sbjct: 476 DSKETEDKVEETESKEADVKAKETDSIEVDDKEEK---TDSKETAD 518
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +2
Query: 413 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSA 550
AEA + D + P K V +VAE ++E + ++E A
Sbjct: 76 AEASTGDASTQSPETSENVVKNSVDESVAEKPEKEDLAVIESEDKA 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,807
Number of Sequences: 5004
Number of extensions: 34855
Number of successful extensions: 136
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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