Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0134
         (725 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         25   3.2  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   4.2  
AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    24   5.5  

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 536 AEGSADSAAIIPQHGEEDRLGSYCKKR 616
           AEG        P+HG E R  ++ +KR
Sbjct: 497 AEGGGTLGVQSPRHGHESRANNFRRKR 523


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 422 KSADIKVEE-PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPQHG 580
           ++ADI+ EE P A  + S  E++     ++ ++ P       +A  AAI+   G
Sbjct: 397 EAADIEGEEQPGAVADVSDDELKLIARRMANKKAPGLDGIPNAAVKAAILEHTG 450


>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
 Frame = +3

Query: 516  KNLVLLMQKVL-----LTQLPSFPNMVKKIDL 596
            KN+ +++Q+V+     L +LPSFP    ++DL
Sbjct: 2143 KNVDMVVQRVVFLHEELMKLPSFPRKALEVDL 2174


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 537,945
Number of Sequences: 2352
Number of extensions: 8167
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)