Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0134
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t pro...    35   0.052
AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical ...    31   0.63 
AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    30   1.5  
U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   5.9  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   5.9  
U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical ...    28   7.8  
AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U23523-10|AAP68941.1|  428|Caenorhabditis elegans Troponin t
           protein 2, isoform a protein.
          Length = 428

 Score = 35.1 bits (77), Expect = 0.052
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = +2

Query: 389 AKSSEIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAII 568
           A+  E  +A A+ A  + EEP A  E++  E +       +EEKP A   E  A   A  
Sbjct: 21  AEEVEEEEAAAEDAAAEEEEPEAAEEEAPVEEKPKPRPPVQEEKPPAEMTEAEAAMLAAK 80

Query: 569 PQHGEED 589
            +H EE+
Sbjct: 81  KRHEEEE 87


>AF100662-2|AAC68976.1|  478|Caenorhabditis elegans Hypothetical
           protein H34C03.1 protein.
          Length = 478

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = +3

Query: 411 MLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQKKKNLVLLMQKVLLTQL-PSFPNMVKK 587
           M  ++LL L WK Q  +L ++ +  +L S    + +    L +  L+ +  P+FP  VKK
Sbjct: 259 MKNKSLLELGWKQQT-ALALEAILERLESESVTQSEVESALHKTFLVVKAEPAFPQPVKK 317

Query: 588 IDLAPTVKSDAAAVPEIKTPEAADAPKLADNPVNEDKP 701
           ID+   VK+     PE+   E     +   + V E  P
Sbjct: 318 IDV--EVKNQDQKNPEVIVIEKGTGERTDIDMVFEGTP 353


>AF026215-8|AAB71317.1|  415|Caenorhabditis elegans Hypothetical
           protein F09G2.9 protein.
          Length = 415

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +2

Query: 392 KSSEIPDAEAKSADIKV-----EEPAAQPEDSKTEVQATVAEISKEEKPSATD 535
           KS E P  E K ++  V     +EPAA  E+ K   +  V E  KEE P++++
Sbjct: 126 KSEEAPAPEEKKSEEVVAAEEKKEPAAVVEEKKEVPETPVVEDKKEEAPASSE 178


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 413 AEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIPQHGEEDR 592
           AE    D K EEP  + E+ K EV+    +  K+E+P   + +   +    + +  EE++
Sbjct: 281 AEKNEEDKKEEEPKKE-EEKKEEVEKKEEDEKKDEEPKKEEEKKEEEQKEEVEKKEEEEK 339

Query: 593 LGSYCKK 613
                KK
Sbjct: 340 KDEEPKK 346


>U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical
           protein T20F5.5 protein.
          Length = 226

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 422 KSADIKVEEPAAQPEDSK-TEVQATVAEISKEEKPSATDAEGSADSAAIIPQHGEEDRL 595
           KSA  K+  P+ + ED++ T+  A+  E S + KP  T  E SAD    +     + +L
Sbjct: 66  KSASKKLRVPSKESEDTQPTKSDASQTEKSTK-KPPVTLVESSADVTTAVESISSQQQL 123


>U23181-6|AAC48204.1|  801|Caenorhabditis elegans Hypothetical
           protein ZK84.1 protein.
          Length = 801

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 25/101 (24%), Positives = 38/101 (37%)
 Frame = +2

Query: 269 SNDEVPAIPEAKKDDIAPEDSDIAXXXXXXXXXXXXXXXXAKSSEIPDAEAKSADIKVEE 448
           +++  PA  EA   D A  ++  A                A SS +P+     A    E 
Sbjct: 504 ASEPAPAPIEAPATDAATLETAPAPAAEPAPAAEAAAGYDAPSS-VPEETPAPAPAADET 562

Query: 449 PAAQPEDSKTEVQATVAEISKEEKPSATDAEGSADSAAIIP 571
           PA  P   +T   A  AE +    P+A +   +A +A   P
Sbjct: 563 PAPAPAAEETPAPAPAAEETPAPAPAAEETPATAPAAEETP 603


>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 122 VSLAMPVAEEKDVVPAQPIL 181
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 122 VSLAMPVAEEKDVVPAQPIL 181
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 122 VSLAMPVAEEKDVVPAQPIL 181
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 122 VSLAMPVAEEKDVVPAQPIL 181
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>U28734-1|AAB52603.2|  397|Caenorhabditis elegans Hypothetical
           protein C53C9.2 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 401 EIPDAEAKSADIKVEEPAAQPEDSKTEVQATVAEISKEEKPSATDAE 541
           E  + E +  + K+EEPAA+ E+ + E +    E   EE+    + E
Sbjct: 347 EPEEEEEEEEEEKIEEPAAKEEEEEEEEEEEEEEEELEEEEEEEEEE 393


>AL032646-7|CAA21680.1|  485|Caenorhabditis elegans Hypothetical
           protein Y54E2A.8 protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 25/72 (34%), Positives = 37/72 (51%)
 Frame = +3

Query: 465 KIQKLKYKLPSLKFQKKKNLVLLMQKVLLTQLPSFPNMVKKIDLAPTVKSDAAAVPEIKT 644
           K +K K +LPSLKF+  K++V ++QK    +LP  P+       AP    +A  +  I  
Sbjct: 330 KRKKEKEQLPSLKFKFGKDVVDMIQK---KELPLPPHK------APATDENANKLEAI-P 379

Query: 645 PEAADAPKLADN 680
           P A    KL +N
Sbjct: 380 PSATKPGKLTEN 391


>AC006607-9|AAF60368.2|  995|Caenorhabditis elegans Hypothetical
           protein C09E7.7 protein.
          Length = 995

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 408 PMLKQNLLILKWKNQLLSLKIQKLKYKLPSLKFQ 509
           P L  N+LI  WK +    K ++ KY +  LK Q
Sbjct: 199 PKLSLNVLISMWKKEFSDWKDEEFKYFIDFLKSQ 232


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,074,657
Number of Sequences: 27780
Number of extensions: 194439
Number of successful extensions: 831
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 828
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)