Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0133
         (389 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   5.5  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   5.5  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    24   7.2  
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe...    24   7.2  
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    24   9.5  
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy...    24   9.5  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    24   9.5  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    24   9.5  

>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 95  TIDFYGEGITSCNKNQTRKI 154
           T DFYG  + SC+ +Q  K+
Sbjct: 21  TYDFYGRRMVSCSADQRVKV 40


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 184 GATISNYVNYNFSGLIFIARC 122
           GA IS+Y NY F    + A C
Sbjct: 135 GADISDYFNYGFDEFTWAAYC 155


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 356 VNELTAHLVLSGYWSP*TSSNVSIIVTAAAPPFKPKRIT 240
           V  + A+++  GY     S N   +V +A  PF PK ++
Sbjct: 385 VEAILANMISKGYMRGYISRNFETVVLSAKDPF-PKNVS 422


>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 53  GTNASNEIRTQQMFTIDFYGEGI 121
           G +A  E RT  +F   FYG G+
Sbjct: 66  GIDALEEWRTNPLFKEQFYGSGL 88


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 389 FFFIFFLLLRWVNELTAHLVLSGYWS 312
           FFFI F L+ ++      +VL G WS
Sbjct: 20  FFFILFPLVSFLMWTIGLIVLLGLWS 45


>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 375

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 268 PHPSNRNALLLHGRKRRGDGTHP 200
           PHP N   +LL G   + D + P
Sbjct: 97  PHPENSKIVLLMGSNAQNDPSSP 119


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 208 YHHPASFCREAVMRFGLKGGAAAVTIIETLEDV 306
           +  P+SF  E V+   L GG A V +  TLE +
Sbjct: 87  FKKPSSFTGEDVVELQLHGGTAVVDV--TLEAI 117


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 279 YSSCPTLQTETHYCFTA 229
           Y +CP L +   +CF+A
Sbjct: 517 YPACPLLTSRVRFCFSA 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,702,134
Number of Sequences: 5004
Number of extensions: 33171
Number of successful extensions: 58
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 128029482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)