Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0133
         (389 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    31   0.43 
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    29   1.3  
01_06_1749 - 39636951-39638102                                         28   3.0  
11_08_0102 - 28354880-28355056,28355159-28355376,28355634-283557...    27   4.0  
10_08_0910 - 21495633-21495923,21496155-21496430,21496754-214969...    27   4.0  
08_02_1461 - 27299891-27301870                                         27   4.0  
02_03_0151 - 15759254-15760459                                         26   9.2  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 30.7 bits (66), Expect = 0.43
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 5   GAFVLKRCTGVRIPQAGTNASNEIRTQQMFTIDFYGE 115
           G  ++ RCTGV I   G N   +I T      DF+GE
Sbjct: 153 GGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 50  AGTNASNEIRTQQMFTIDFYGEGITSC-NKNQTRKIIIYVITDGSTSCESTRVGTITPPL 226
           +GT+   +    ++  +D  G GIT+C  +N+ +K    ++   +    + RV   T  L
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 227 SAV 235
           +AV
Sbjct: 89  NAV 91


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 290 SIIVTAAAPPFKPKRITA 237
           S + +AAAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>11_08_0102 -
           28354880-28355056,28355159-28355376,28355634-28355712,
           28356451-28356519,28356602-28356681,28356818-28356925,
           28357103-28357169,28357894-28357959,28358042-28358119,
           28358198-28358250,28359542-28359575,28359851-28359865,
           28360082-28360109,28360628-28360716,28361688-28361810,
           28362192-28362296,28362381-28362485,28362924-28363139,
           28364656-28364845,28365193-28365418,28366096-28366162
          Length = 730

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 181 ATISNYVNYNFSGLIFIARCYSFTVEVNREHLLSTYFIRS 62
           AT +N V  +   ++ I RC  F   +NR +L    F +S
Sbjct: 269 ATATNKVQIDLIEMLHIPRCVKFVSTINRPNLFYKVFEKS 308


>10_08_0910 -
           21495633-21495923,21496155-21496430,21496754-21496999,
           21497187-21497296,21498228-21498387
          Length = 360

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 211 HHPASFCREA--VMRFGLKGGAAAVTIIETLEDVYGLQ*PLNTRW 339
           H+P   CR+A  V+ F        +T++  + DV GLQ   N RW
Sbjct: 203 HYP--HCRQADKVLGFSAHTDGVGLTLLLQVNDVQGLQIRKNGRW 245


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 265 HPSNRNALLLHGRKRRGDGTHPRGL 191
           H ++    LL GR+R G G H RGL
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGL 306


>02_03_0151 - 15759254-15760459
          Length = 401

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 198 RGWVPSPRLFLP*SSNAFRFEGWGSC 275
           R W P+ +L LP  +N    E W +C
Sbjct: 217 RQWGPARQLQLPEGNNTASVESWAAC 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,745,844
Number of Sequences: 37544
Number of extensions: 242379
Number of successful extensions: 538
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 660830060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)