Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0133
(389 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22302| Best HMM Match : Trefoil (HMM E-Value=0.00016) 28 2.4
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.1
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 27 4.1
SB_32398| Best HMM Match : PspC (HMM E-Value=1.4) 27 4.1
SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002) 27 4.1
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08) 27 7.2
SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23) 27 7.2
SB_51614| Best HMM Match : ROK (HMM E-Value=7) 27 7.2
SB_3898| Best HMM Match : CITED (HMM E-Value=1.5) 26 9.5
>SB_22302| Best HMM Match : Trefoil (HMM E-Value=0.00016)
Length = 137
Score = 28.3 bits (60), Expect = 2.4
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 354 ERAHSPPGVKWLLESIDIF*RLNYSYSSCPTLQTETHYCFTAERGG 217
E P GV L+ F LNY YS + T+T Y T +R G
Sbjct: 65 EPTSKPTGVNAPLDIPYCFYPLNYGYSLTSKVATKTGYKLTLQRQG 110
>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2317
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/76 (26%), Positives = 31/76 (40%)
Frame = +2
Query: 2 SGAFVLKRCTGVRIPQAGTNASNEIRTQQMFTIDFYGEGITSCNKNQTRKIIIYVITDGS 181
+ A + K T I GT A I T + T+ + + +IT+G+
Sbjct: 1006 TSASMTKHATAAPITTNGTTAE-PISTDGTTVLSMSTARTTTASMSTAGTTAAPIITNGT 1064
Query: 182 TSCESTRVGTITPPLS 229
T+ T GT T P+S
Sbjct: 1065 TAAPITTNGTTTEPMS 1080
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 113 EGITSCNKNQTRKIIIYVITDGSTSCESTRVGTITPPLS 229
+G T+ ++ R +ITDG+T+ + GT P+S
Sbjct: 1651 DGTTAVPRSMDRTTAAPMITDGTTAAPMSTDGTTAVPMS 1689
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 27.5 bits (58), Expect = 4.1
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 28 HRCSNPAGGYQC 63
H C N AGGYQC
Sbjct: 408 HTCQNTAGGYQC 419
>SB_32398| Best HMM Match : PspC (HMM E-Value=1.4)
Length = 203
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 197 WTHKRCYHQ*LRKL*FFGFDFYCTML 120
WT CY+ L +FGFD Y T L
Sbjct: 77 WTIITCYNWFTVSLVYFGFDLYTTQL 102
>SB_19693| Best HMM Match : Sugar_tr (HMM E-Value=0.0002)
Length = 512
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -1
Query: 197 WTHKRCYHQ*LRKL*FFGFDFYCTML 120
WT CY+ L +FGFD Y T L
Sbjct: 311 WTIITCYNWFTVSLVYFGFDLYTTQL 336
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 27.1 bits (57), Expect = 5.4
Identities = 19/67 (28%), Positives = 28/67 (41%)
Frame = +2
Query: 29 TGVRIPQAGTNASNEIRTQQMFTIDFYGEGITSCNKNQTRKIIIYVITDGSTSCESTRVG 208
T V + GT A+ I T +G T+ + I +ITDG+T+ G
Sbjct: 2269 TAVPMSTDGTTAA-PISTDGTTAAPMSTDGTTAATISTDGTTAIPIITDGATAAPMNMDG 2327
Query: 209 TITPPLS 229
T P+S
Sbjct: 2328 TTAAPMS 2334
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/67 (26%), Positives = 28/67 (41%)
Frame = +2
Query: 29 TGVRIPQAGTNASNEIRTQQMFTIDFYGEGITSCNKNQTRKIIIYVITDGSTSCESTRVG 208
T V + GT A+ I T +G T+ N + + TDG+T+ + G
Sbjct: 2189 TAVPMSTDGTTAA-PISTDGTTAAPMSTDGTTAAPMNMDGTTAVPISTDGTTAAPMSTDG 2247
Query: 209 TITPPLS 229
T P+S
Sbjct: 2248 TTAVPMS 2254
>SB_42336| Best HMM Match : Sushi (HMM E-Value=1.5e-08)
Length = 303
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 28 HRCSNPAGGYQCF 66
H C+N GGYQC+
Sbjct: 19 HFCNNTVGGYQCY 31
>SB_58424| Best HMM Match : ADAM_spacer1 (HMM E-Value=8.5e-23)
Length = 487
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 241 LLHGRKRRGDGTHPRGLTRGAT 176
L+ R + DG+HP G +RG T
Sbjct: 231 LVVNRDQTADGSHPHGASRGVT 252
>SB_51614| Best HMM Match : ROK (HMM E-Value=7)
Length = 727
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 214 HPASFCREAVMRFGLKGGAAAVT 282
HP +F REA RF GGA +V+
Sbjct: 540 HPTNFWREAKRRFVSGGGAPSVS 562
>SB_3898| Best HMM Match : CITED (HMM E-Value=1.5)
Length = 1166
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 214 HPASFCREAVMRFGLKGGAAAVT 282
HP F REA RF GGA +V+
Sbjct: 979 HPTDFWREAKRRFVSGGGAPSVS 1001
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,085,967
Number of Sequences: 59808
Number of extensions: 258915
Number of successful extensions: 661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 681761575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -