Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0133
         (389 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   5.0  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    20   8.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   8.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 206 PPAWTHKRC 180
           PPA++H RC
Sbjct: 472 PPAFSHSRC 480


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -1

Query: 206 PPAWTHKRC 180
           PPA++H RC
Sbjct: 472 PPAFSHSRC 480


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 190 TRGATISNYVNYNFSGLIFIA 128
           T GATI NY    F   +FI+
Sbjct: 564 TSGATIVNYSIMIFLSAVFIS 584


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 264 WGSCCNY 284
           WGSC NY
Sbjct: 98  WGSCNNY 104


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 8.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 253 RNALLLHGRKRRGDGTHPRGLTRGATISN 167
           R  LL H ++R     HP   T+G  +++
Sbjct: 148 REMLLEHKKRRARRDIHPELNTQGIALAD 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,353
Number of Sequences: 438
Number of extensions: 2788
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9514659
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)