Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0133
         (389 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38640.1 68417.m05469 choline transporter-related contains we...    28   2.6  
At3g04690.1 68416.m00503 protein kinase family protein contains ...    27   3.4  
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl...    27   4.5  
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    27   5.9  
At1g01110.1 68414.m00014 expressed protein contains Prosite PS00...    27   5.9  
At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein bet...    26   7.8  

>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -2

Query: 169 NYVNYNFSGLIFIARCYS--FTVEVNREHLLSTYFIRSIGTRL 47
           N    NF+ +   A C S   T E+ R +LLS  F+ ++ TR+
Sbjct: 413 NKFTINFAAITGEAYCTSAKMTYELLRRNLLSAVFVETVSTRI 455


>At3g04690.1 68416.m00503 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 850

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = -2

Query: 223 RRGDGTHPRGLTRGATISNYVNYNFSGLIFIARCYSFTVEVNREHLLSTYFIRSIGTRLR 44
           + G+  H     +  ++ + V Y  + +      Y   ++ ++ HLL  YF  S  T L 
Sbjct: 55  KTGNSIHATATYQDPSLLSTVPYMTARIFTAPATYEIPIKGDKRHLLRLYFYPSTYTGLN 114

Query: 43  DSNT 32
            SN+
Sbjct: 115 ISNS 118


>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
            identical to ubiquitin-protein ligase 2 [Arabidopsis
            thaliana] GI:7108523; E3, HECT-domain protein family;
            similar to ubiquitin-protein ligase 2 GI:7108523 from
            [Arabidopsis thaliana]
          Length = 3658

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 45   RRRVPMLLMKYVLNKCSRLTST 110
            ++RVP ++M+ VL  C+RLT +
Sbjct: 1564 KQRVPAMIMQAVLQLCARLTKS 1585


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 356  VNELTAHLVLSGYWSP*TSSNVSIIVTAAAPP 261
            V+    HL+ +    P TSS  ++ VTA APP
Sbjct: 2719 VDHEAVHLISTAQGQPDTSSIQNVSVTAIAPP 2750


>At1g01110.1 68414.m00014 expressed protein contains Prosite
           PS00165: Serine/threonine dehydratases
           pyridoxal-phosphate attachment site
          Length = 364

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 294 RLNYSYSSCPTLQTETHYCFTAERGGVMVPTRVDSQEVLPS 172
           R  YSY+S  T    ++Y FTA  G  +  T V++  +LP+
Sbjct: 224 RAAYSYTS-NTPSLRSNYSFTARSGCSISTTMVNNASLLPN 263


>At3g47010.1 68416.m05105 glycosyl hydrolase family 3 protein
           beta-D-glucan exohydrolase, Nicotiana tabacum,
           TREMBL:AB017502_1
          Length = 581

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 268 PHPSNRNALLLHGRKRRGDGTHPRGLTRGATISNY 164
           P  + RN ++   +   GDG   +GL+ G TI++Y
Sbjct: 171 PFLAGRNNVIACAKHFVGDGGTEKGLSEGNTITSY 205


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,046,245
Number of Sequences: 28952
Number of extensions: 182312
Number of successful extensions: 312
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 557595584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)