Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0132
(631 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1689 + 39204726-39205131,39208214-39208602,39208686-392088... 30 1.7
04_04_0328 + 24441747-24442073,24442205-24442327,24442947-244430... 29 3.0
02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023 29 4.0
01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248 28 5.3
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 28 7.0
11_06_0610 - 25449085-25453284 27 9.3
08_02_0056 + 11751585-11751672,11751741-11752060,11755363-117554... 27 9.3
04_04_0202 - 23573425-23573949,23574285-23574593 27 9.3
02_05_0347 - 28155272-28155437,28155518-28155792 27 9.3
01_01_0656 + 5013609-5014256 27 9.3
>01_06_1689 +
39204726-39205131,39208214-39208602,39208686-39208820,
39208936-39209001,39209150-39209218,39209402-39209455
Length = 372
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +3
Query: 60 LKMKAITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEV 239
L+++ + C A R R+ I L KLQDLVP M K S ++
Sbjct: 283 LQLQPDSVACRARAKRGCATHPRSIAERE-RRTRISKRLKKLQDLVPNMDKQTNTS--DM 339
Query: 240 IQHVIDYICDLQSALE 287
+ + YI +LQ +E
Sbjct: 340 LDIAVTYIKELQGQVE 355
>04_04_0328 +
24441747-24442073,24442205-24442327,24442947-24443012,
24443155-24443223,24443263-24443307
Length = 209
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 174 LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALEN 290
L KLQ LVP M K S +++ +D+I LQS L+N
Sbjct: 160 LRKLQALVPNMDKQTSTS--DMLDLAVDHIKGLQSQLQN 196
>02_04_0533 + 23719353-23719910,23720012-23720418,23720690-23721023
Length = 432
Score = 28.7 bits (61), Expect = 4.0
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 133 SDTGMAKTLRYKCTSRSSRISYPSCPRIER 222
+DT + RYKCT+ R SY R+ER
Sbjct: 335 ADTFVEHFTRYKCTTAGERKSYGCMQRLER 364
>01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248
Length = 248
Score = 28.3 bits (60), Expect = 5.3
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +3
Query: 51 VQ*LKMKAITA-VCATGASVPAIASGRVQRH----RDGENAEIQMYLSKLQDLVPFMPKN 215
VQ L M TA ++G S R H RD ++Y S L+ L+P
Sbjct: 43 VQDLSMAPTTANAVSSGYGSGGSGSHRKLSHNAYERDRRKQLNELY-SSLRALLPDADHT 101
Query: 216 RKISKLEVIQHVIDYICDLQSALEN 290
+K+S + V+ YI +LQ +EN
Sbjct: 102 KKLSIPTTVSRVLKYIPELQKQVEN 126
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +3
Query: 114 IASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVID--YICDLQSAL 284
I RV D A I+ + + +DLV + + LEVI+HV + C+ SAL
Sbjct: 104 IKIARVHAASDPSTASIEYFCTTAEDLVKENKQFDAVISLEVIEHVANPSGFCESLSAL 162
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +2
Query: 356 AAPPSEETARPSPYAQHHPPQITL-HTRTQKSNG 454
++PP E + P+P A H PP + HT + +G
Sbjct: 547 SSPPPEGKSPPTPTASHSPPPVPEGHTPSPPKSG 580
>08_02_0056 +
11751585-11751672,11751741-11752060,11755363-11755483,
11755950-11756137,11756224-11756355,11756535-11756577,
11757298-11757395
Length = 329
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -2
Query: 438 VRVWRVICGGWCWA*GEGLAVSSEGGAAA 352
V VWR CGG C + +A + GG A
Sbjct: 37 VAVWRCGCGGGCGGGEDAVAAAMGGGGEA 65
>04_04_0202 - 23573425-23573949,23574285-23574593
Length = 277
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 350 VAAAPPSEETARPSPYAQHHPP 415
VAA PP P P+A H PP
Sbjct: 201 VAATPPVPALPSPPPHADHPPP 222
>02_05_0347 - 28155272-28155437,28155518-28155792
Length = 146
Score = 27.5 bits (58), Expect = 9.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 426 STHEHRNQTAPEKQNQPDR 482
+ H HR++ AP++Q QP R
Sbjct: 128 AAHHHRSERAPQRQLQPQR 146
>01_01_0656 + 5013609-5014256
Length = 215
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 332 VATLRSVAAAPPSEETARPSPYAQHHPP 415
+ T+ S PP T+ PSP HPP
Sbjct: 173 LGTMSSAPPPPPPPATSTPSPAPAAHPP 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,783,055
Number of Sequences: 37544
Number of extensions: 328944
Number of successful extensions: 1164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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