Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0130
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   146   2e-36
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   146   2e-36
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    26   3.2  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   7.3  
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   9.6  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  146 bits (353), Expect = 2e-36
 Identities = 68/95 (71%), Positives = 80/95 (84%), Gaps = 1/95 (1%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLP 323
           IV+ L GR+NKCGVISPRF+V + DIE+W N LLP
Sbjct: 61  IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLP 95



 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = +2

Query: 320 PSRQFGYLVLTTSGGIMDHEEARKKHLGGKILGFFF 427
           PSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 95  PSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  146 bits (353), Expect = 2e-36
 Identities = 68/95 (71%), Positives = 80/95 (84%), Gaps = 1/95 (1%)
 Frame = +3

Query: 42  MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
           MVR +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GK
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGK 60

Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWTN-LLP 323
           IV+ L GR+NKCGVISPRF+V + DIE+W N LLP
Sbjct: 61  IVIQLNGRINKCGVISPRFNVKLKDIEKWVNQLLP 95



 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 26/36 (72%), Positives = 28/36 (77%)
 Frame = +2

Query: 320 PSRQFGYLVLTTSGGIMDHEEARKKHLGGKILGFFF 427
           PSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 95  PSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 318 LPHDSLVT*SLQQVVASWTMKKPEKNTLEEK 410
           +P+ S +T SL Q +  W +++PE     EK
Sbjct: 153 IPNQSFLTASLDQKIFHWVIEEPESMLDAEK 183


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 332 FGYLVLTTSGGIMDHEEARKKHLGGKIL 415
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 175 PCFIITVKNLTMTLEQGLMRTCLFPRFSALCIDFKASLNTFIRTMAK 35
           P  +I   N   +L+  L R   F R   L +  + +    +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,108,861
Number of Sequences: 5004
Number of extensions: 40763
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)