Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0130
(545 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 157 5e-39
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 156 9e-39
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 87 9e-18
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 42 2e-04
11_01_0526 - 4140853-4141017,4141416-4141619 28 4.2
03_06_0448 - 34005581-34005655,34005735-34005830,34006669-340076... 27 9.8
03_03_0226 + 15590276-15590469,15590515-15590539,15590865-155910... 27 9.8
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 157 bits (381), Expect = 5e-39
Identities = 74/95 (77%), Positives = 84/95 (88%), Gaps = 1/95 (1%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
MVR++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLP 323
IVV L GRLNKCGVISPRFDV + +IE WT LLP
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLP 95
Score = 70.9 bits (166), Expect = 6e-13
Identities = 29/36 (80%), Positives = 35/36 (97%)
Frame = +2
Query: 320 PSRQFGYLVLTTSGGIMDHEEARKKHLGGKILGFFF 427
PSRQFGY+VLTTS GIMDHEEAR+K++GGK+LGFF+
Sbjct: 95 PSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 156 bits (379), Expect = 9e-39
Identities = 73/95 (76%), Positives = 84/95 (88%), Gaps = 1/95 (1%)
Frame = +3
Query: 42 MVRMNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGK 221
MVR++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GK
Sbjct: 1 MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGK 60
Query: 222 IVVNLTGRLNKCGVISPRFDVPINDIERWT-NLLP 323
IVV L GRLNKCGVISPRFDV + +IE WT LLP
Sbjct: 61 IVVELNGRLNKCGVISPRFDVGVKEIESWTARLLP 95
Score = 60.1 bits (139), Expect = 1e-09
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +2
Query: 320 PSRQFGYLVLTTSGGIMDHEEARKKHLGGKIL 415
PSRQFGY+VLTTS GIMDHEEAR+K++GGK L
Sbjct: 95 PSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 87.0 bits (206), Expect = 9e-18
Identities = 40/90 (44%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Frame = +3
Query: 57 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 236
+L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64
Query: 237 TGRLNKCGVISPRFDVPINDIERW-TNLLP 323
GR+ C ++ R D+ +IE++ +LP
Sbjct: 65 HGRIKDCKALTYRQDIRAKEIEQYRVRMLP 94
Score = 55.2 bits (127), Expect = 3e-08
Identities = 20/35 (57%), Positives = 32/35 (91%)
Frame = +2
Query: 320 PSRQFGYLVLTTSGGIMDHEEARKKHLGGKILGFF 424
P+RQ+GY+V+TT G++DHEEA K+++GG++LG+F
Sbjct: 94 PTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 42.3 bits (95), Expect = 2e-04
Identities = 18/34 (52%), Positives = 25/34 (73%)
Frame = +3
Query: 198 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDI 299
VDDH++G+I++ GRLNK GVIS R DV + +
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKL 945
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 28.3 bits (60), Expect = 4.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 216 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 311
G++ + LNKCGVI+P I+D+ T
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDLSHRT 109
>03_06_0448 -
34005581-34005655,34005735-34005830,34006669-34007616,
34007684-34007851,34007908-34008099,34008164-34008346,
34008414-34008590,34008667-34012074
Length = 1748
Score = 27.1 bits (57), Expect = 9.8
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
Frame = +3
Query: 300 ERWTNLLPHDSLVT*SLQQVVASWTMKKPEKNTL-----EEKF*ASFSKFT*YTSNVKKK 464
E W LPH L + VV S K+ K TL EE+ K SN KK
Sbjct: 442 EWWRQPLPHSHLDVGAASTVVESKVSKRKVKKTLVAIEAEEEKERKLKKARVLPSNNDKK 501
Query: 465 KKLE 476
+KL+
Sbjct: 502 RKLQ 505
>03_03_0226 +
15590276-15590469,15590515-15590539,15590865-15591014,
15591166-15591594
Length = 265
Score = 27.1 bits (57), Expect = 9.8
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 216 GKIVVNLTGRLNKCGVISPRFDVPINDIERWT 311
G++ + L+KCGV++P I+D+ T
Sbjct: 83 GRVHPTIENILDKCGVVAPNLPTKIDDLSHST 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,681,700
Number of Sequences: 37544
Number of extensions: 266902
Number of successful extensions: 490
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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