Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0130
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    25   0.66 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   2.7  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.2  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.6 bits (51), Expect = 0.66
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +3

Query: 363 ASWTMKKPEKNTLEEKF*ASFSKFT*YTSNVKKKKKLE 476
           AS T KK +KN        S S+FT Y +N   KKK E
Sbjct: 576 ASSTCKKDKKNA------GSGSRFTIYKANKASKKKRE 607


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -1

Query: 218 ASSVIINDFKLSDVTVLHHH 159
           A+  +++ F++ +VT++ HH
Sbjct: 344 ANVAVLHSFQMKNVTIVDHH 363


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 6   FGSLRSAS*ILAMVRMNVLSDALKSIHNAEKRGKR 110
           FGS+  A  I+ ++ +        SI NAE+RG R
Sbjct: 197 FGSVAIAIAIVELIGIICALCLANSIKNAERRGYR 231


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 536 KRRPVNCNTTHYRANGD 486
           K++P +C+T  YR NG+
Sbjct: 565 KKQPSDCDTLEYR-NGE 580


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 108 FSLAFQHYV*ILRRHSIRSYAPWLRF 31
           F LAF   + +  ++ I     WLRF
Sbjct: 56  FGLAFVQLINVNEKNQIMKSNVWLRF 81


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 473 RGGPGPHSPYSESYYNSLAVVL 538
           +G PG +SPY+ +    +A+VL
Sbjct: 27  QGFPGKNSPYTVTQAILIALVL 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,018
Number of Sequences: 438
Number of extensions: 2597
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)