Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0129
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC777.10c |ubc12||ubiquitin conjugating enzyme Ubc12|Schizosac... 43 2e-05
SPBC1105.09 |ubc15||ubiquitin conjugating enzyme Ubc15|Schizosac... 31 0.10
SPAC328.08c |||tubulin specific chaperone cofactor C |Schizosacc... 29 0.31
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 28 0.71
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 27 1.2
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 2.2
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha... 26 2.9
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 25 5.0
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 25 5.0
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces... 25 6.6
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 6.6
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual 24 8.7
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos... 24 8.7
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 24 8.7
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 24 8.7
>SPCC777.10c |ubc12||ubiquitin conjugating enzyme
Ubc12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 42.7 bits (96), Expect = 2e-05
Identities = 20/44 (45%), Positives = 27/44 (61%)
Frame = -3
Query: 206 PNPEDPLNKEAADELQSNRRLFEQHVQRAMRGGYVGTSYFERCL 75
PN EDPLNKEAA +L + + F V+ AM+GG V F+ +
Sbjct: 133 PNAEDPLNKEAAADLHKDPQGFASRVRTAMKGGLVNGISFDNVM 176
>SPBC1105.09 |ubc15||ubiquitin conjugating enzyme
Ubc15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 167
Score = 30.7 bits (66), Expect = 0.10
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 206 PNPEDPLNKEAADELQSNRRLFEQHVQRAMR 114
PN E P N +AA E + N + F++ V+R +R
Sbjct: 131 PNDESPANIDAAKEFRENPQEFKKRVRRLVR 161
>SPAC328.08c |||tubulin specific chaperone cofactor C
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 29.1 bits (62), Expect = 0.31
Identities = 13/58 (22%), Positives = 26/58 (44%)
Frame = -1
Query: 217 FFRNQTLKIPSTRKQRTSSKATGDFSNNTFRELCEAATSAHLISNDASNENLHTCKKC 44
+F N TL + + + Q +N + ++ S ++ ++ S+ NLH KC
Sbjct: 115 YFENDTLYLANLKNQNIGDNVIPYPNNKAVKVSAKSLRSCNISISNCSSVNLHNATKC 172
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 27.9 bits (59), Expect = 0.71
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = -3
Query: 209 EPNPEDPLNKEAADELQSNRRLFEQ 135
EPNP+DPL A++ +++R F++
Sbjct: 119 EPNPDDPLVASIAEQYRNDRPSFDK 143
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -3
Query: 191 PLNKEAADELQSNRRLFEQHVQRAMRGGYVGTSYF 87
PL E +LQ R+L +H+Q GG VGT F
Sbjct: 49 PLQPEDTQDLQ--RKLKPRHMQMIAIGGCVGTGLF 81
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 147 SPVALELVRCFLVEGIFRVWFLKKKKTIPIHV 242
+P L L+ FL +FR+ KKT+ +H+
Sbjct: 410 APTTLFLISDFLKSTLFRLLLDASKKTVVVHI 441
>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 25.8 bits (54), Expect = 2.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 209 EPNPEDPLNKEAADELQSNRRLFE 138
+PNP+DPL E A +++R +E
Sbjct: 112 DPNPDDPLVPEIAHVYKTDRSRYE 135
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 347 PHPSNRNALLLHGRNRQGGGTHP 279
PHP N +LL G N Q + P
Sbjct: 97 PHPENSKIVLLMGSNAQNDPSSP 119
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 5.0
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -1
Query: 241 TCIGIVF-FFFRNQTLKIPSTRKQRTSSKATGDFSNNTFR 125
TC G + +F+ L+IP+T+ R +S SN +FR
Sbjct: 7 TCTGYMNGIYFQEGLLEIPTTKSIRMNSIHIKKKSNRSFR 46
>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 6.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = -3
Query: 191 PLNKEAADELQSNRRLFEQHVQRAMRGGYVGTSYF 87
P+ + D + R L +H+Q GG +GT F
Sbjct: 69 PVKADREDGVALKRHLKGRHMQMIAIGGAIGTGLF 103
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 6.6
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -1
Query: 238 CIGIVFFFFRNQTLKIPSTRKQ--RTSSKATGDFSNNTFRELCEAATSAHLISNDASNEN 65
CI F +L+ P++ K+ +S +G SNNT R L + + +D++ +N
Sbjct: 612 CIESDSKFDEGTSLEYPNSDKRILARASLTSGLKSNNTLRALSQDLKNCAKSKDDSTTQN 671
Query: 64 L 62
L
Sbjct: 672 L 672
>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
Length = 324
Score = 24.2 bits (50), Expect = 8.7
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 48 FLHVCRFSFEASFEIRCADVAASHSSLNVLFEKSPVALELVRCFLVEGIFRVWFLKKKK 224
++HV FSF A + + +++ +LN + + L F + I +WF+K ++
Sbjct: 247 YIHV--FSFYADMLMTLVLIISAYIALNAVASVVIAFVFLSLIFFISFICPIWFIKLQR 303
>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -2
Query: 369 SSNSSTAAPPFKPKRITASRPK*AG 295
S+NSST PP + A+ PK +G
Sbjct: 118 SANSSTVLPPRTENALHAASPKPSG 142
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 24.2 bits (50), Expect = 8.7
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = -3
Query: 185 NKEAADELQSNRRLFEQHVQRAMRGGYVGTSYFERCL 75
+K D LQS R FE H GT Y + L
Sbjct: 279 HKSMRDALQSERSFFEHHPAYRTIKDRCGTPYLAKTL 315
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 24.2 bits (50), Expect = 8.7
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = -1
Query: 181 RKQRTSSKATGDFSNNTFRELCEAATSAHLISNDASNENLHTCKKC 44
RK S TGD ++ F EAAT A L D+ N+ T KC
Sbjct: 157 RKYMECSSLTGDGVDDVF----EAATRAALTVRDSENDKSST--KC 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,751,979
Number of Sequences: 5004
Number of extensions: 34983
Number of successful extensions: 114
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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