Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0129
(430 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 35 0.028
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 35 0.028
U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical pr... 28 3.3
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 3.3
U49944-4|AAA93419.1| 457|Caenorhabditis elegans Neuropeptide re... 28 3.3
Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical pr... 27 4.3
U37429-5|AAA79347.1| 311|Caenorhabditis elegans Hypothetical pr... 27 5.7
Z75956-2|CAJ90493.2| 384|Caenorhabditis elegans Hypothetical pr... 26 10.0
Z75956-1|CAB00128.2| 489|Caenorhabditis elegans Hypothetical pr... 26 10.0
AL132902-11|CAC70125.2| 205|Caenorhabditis elegans Hypothetical... 26 10.0
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 26 10.0
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 34.7 bits (76), Expect = 0.028
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 209 EPNPEDPLNKEAADELQSNRRLFEQHVQRAMRGGYV 102
EPNP P N AA Q NRR +E+ VQ+ + ++
Sbjct: 115 EPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSWL 150
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 34.7 bits (76), Expect = 0.028
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -3
Query: 209 EPNPEDPLNKEAADELQSNRRLFEQHVQRAMRGGYV 102
EPNP P N AA Q NRR +E+ VQ+ + ++
Sbjct: 115 EPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSWL 150
>U80439-9|AAO38675.1| 661|Caenorhabditis elegans Hypothetical
protein C01G8.9b protein.
Length = 661
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 408 GYRAPPRDIRSKVSSNSSTAAPPFKPKRITASRPK 304
GY+ D + S+NS AAP P++ T+S PK
Sbjct: 501 GYQPSQTDDKESTSTNSDAAAP---PQKSTSSSPK 532
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical protein
C01G8.9a protein.
Length = 1724
Score = 27.9 bits (59), Expect = 3.3
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 408 GYRAPPRDIRSKVSSNSSTAAPPFKPKRITASRPK 304
GY+ D + S+NS AAP P++ T+S PK
Sbjct: 1564 GYQPSQTDDKESTSTNSDAAAP---PQKSTSSSPK 1595
>U49944-4|AAA93419.1| 457|Caenorhabditis elegans Neuropeptide
receptor family protein1 protein.
Length = 457
Score = 27.9 bits (59), Expect = 3.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 317 LHGRNR-QGGGTHPRADSQEVLPPVKNMYWNCXXXX*EPNPEDPLNKEAADEL 162
L+GR + GGG+H +E+ +N+ ++ P PE LN+ ++ E+
Sbjct: 385 LNGRAKIGGGGSHEALKERELNSCSENLSYHVNGHTRTPTPEVQLNEVSSPEI 437
>Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical
protein M163.5 protein.
Length = 435
Score = 27.5 bits (58), Expect = 4.3
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +3
Query: 114 SHSSLNVLFEKSPVALELVRCFLVEGIFRVWFLKKKKTIPIHVFYW 251
SH SLN +FE V + F ++ I+++ LK K+ + Y+
Sbjct: 382 SHVSLNKMFENKIVEMFHATMFSMDQIYQIETLKTKREVLTEGMYF 427
>U37429-5|AAA79347.1| 311|Caenorhabditis elegans Hypothetical
protein F09E5.7 protein.
Length = 311
Score = 27.1 bits (57), Expect = 5.7
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +2
Query: 254 VGPLVSLRGGGYH-RPAYFGREAVMRFGLKGG 346
+GPL RGGG H RP F R+ RFG GG
Sbjct: 274 LGPLGQPRGGGSHGRP--FMRDPNGRFGGNGG 303
>Z75956-2|CAJ90493.2| 384|Caenorhabditis elegans Hypothetical
protein R31.2b protein.
Length = 384
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 308 GREAVMRFGLKGGAAVELLLETLERISRG 394
G+E R L GG+ VE L T+E+ +G
Sbjct: 88 GKETYKRVTLPGGSDVERLKTTIEKACKG 116
>Z75956-1|CAB00128.2| 489|Caenorhabditis elegans Hypothetical
protein R31.2a protein.
Length = 489
Score = 26.2 bits (55), Expect = 10.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 308 GREAVMRFGLKGGAAVELLLETLERISRG 394
G+E R L GG+ VE L T+E+ +G
Sbjct: 193 GKETYKRVTLPGGSDVERLKTTIEKACKG 221
>AL132902-11|CAC70125.2| 205|Caenorhabditis elegans Hypothetical
protein Y71A12B.13a protein.
Length = 205
Score = 26.2 bits (55), Expect = 10.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -1
Query: 190 PSTRKQRTSSKATGDFSN-NTFRELCEAATSAHLISND 80
PS R TS + +GDFSN ++FR A + L S D
Sbjct: 40 PSNRTMGTSIQISGDFSNLSSFRPENSAISEIVLDSGD 77
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 26.2 bits (55), Expect = 10.0
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -3
Query: 206 PNPEDPLNKEAADELQSN 153
PNPEDPL + A++ ++N
Sbjct: 116 PNPEDPLATDVAEQWKTN 133
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,087,362
Number of Sequences: 27780
Number of extensions: 214752
Number of successful extensions: 612
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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