Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0129
         (430 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   4.4  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   7.7  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   7.7  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.7  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 368 ETLERISRGGARYPIRP 418
           + +E I R  +RYP+RP
Sbjct: 111 QDIETIIRRNSRYPLRP 127


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = -1

Query: 139 NNTFRELCEAATSAHLISND 80
           N    ELC      H+IS D
Sbjct: 264 NEDLEELCRGCNLGHMISYD 283


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -2

Query: 420 IGRIGYRAPPRDIRSKVSSNSSTAAPPFKPK 328
           I R  Y  PP      +  N+    PP  P+
Sbjct: 150 IPRFRYIGPPTPFPRFIPPNAYRLRPPLNPR 180


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -2

Query: 420 IGRIGYRAPPRDIRSKVSSNSSTAAPPFKPK 328
           I R  Y  PP      +  N+    PP  P+
Sbjct: 150 IPRFRYIGPPTPFPRFIPPNAYRLRPPLNPR 180


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/31 (29%), Positives = 12/31 (38%)
 Frame = -2

Query: 420 IGRIGYRAPPRDIRSKVSSNSSTAAPPFKPK 328
           I R  Y  PP      +  N+    PP  P+
Sbjct: 378 IPRFRYIGPPTPFPRFIPPNAYRLRPPLNPR 408


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -3

Query: 308 RNRQGGGTHPRADSQEVLPPV 246
           RN+QG       D   ++PP+
Sbjct: 592 RNKQGHSARRSGDVAVIVPPI 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,974
Number of Sequences: 438
Number of extensions: 2739
Number of successful extensions: 20
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)