Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0128
         (642 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    27   0.17 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    24   0.93 
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   1.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   1.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   1.2  
AY600515-1|AAT11863.1|  134|Tribolium castaneum optomotor-blind-...    22   4.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.5  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   6.5  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = +3

Query: 420 SAAMSSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTSTGSMTSFVWEDESI 596
           S+A S S+T +   R S  NY   +PQ      ST++    S T T S  S +W   SI
Sbjct: 169 SSASSPSVTAAPHLRDSP-NY--IKPQLHVSTGSTSSPTIASATYTNSANSSIWSPASI 224



 Score = 21.4 bits (43), Expect = 6.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +3

Query: 399 TYLGA*RSAAMSSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTS 554
           TY  +  S+  S +   S +  +      SS+P  +  N +TN  N Y + S
Sbjct: 209 TYTNSANSSIWSPASIDSFTLEQHRSWCSSSQPVLSTTNSTTNCYNNYPYYS 260


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 231 SPNGSARTQPSPIGSMSATPARVIP 305
           SP+G  R   SP+ S S++P  V P
Sbjct: 168 SPSGFNRASVSPLISSSSSPPGVFP 192


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 561 TPSTYENN-NFGHLSNGSLALFEARNFD 481
           TPS   NN NF + SNG+ ++  +  FD
Sbjct: 131 TPSATNNNTNFNNNSNGASSVGSSSPFD 158


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 561 TPSTYENN-NFGHLSNGSLALFEARNFD 481
           TPS   NN NF + SNG+ ++  +  FD
Sbjct: 79  TPSATNNNTNFNNNSNGASSVGSSSPFD 106


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -1

Query: 561 TPSTYENN-NFGHLSNGSLALFEARNFD 481
           TPS   NN NF + SNG+ ++  +  FD
Sbjct: 262 TPSATNNNTNFNNNSNGASSVGSSSPFD 289


>AY600515-1|AAT11863.1|  134|Tribolium castaneum
           optomotor-blind-like protein protein.
          Length = 134

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 11/46 (23%), Positives = 22/46 (47%)
 Frame = +2

Query: 296 GDSYLSELIRIKIYGLNSNKESKHVQCVLKSIPKNVSRRLTFRSNE 433
           G+ ++ +++      L +N   KH   +L S+ K   R    R+N+
Sbjct: 64  GEQWMQKVVSFHKLKLTNNISDKHGFTILNSMHKYQPRFHLVRAND 109


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 195  DTPVNVLKSSAILFCLKKNLNYI*KILSY 109
            DT +    S  IL  LKK  NY  ++L+Y
Sbjct: 1153 DTKITAA-SETILHGLKKYTNYSMEVLAY 1180


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 542 ITISGICRTVHWRFLRLGTLIVQ 474
           +TISG+ RT  ++ L    LIVQ
Sbjct: 45  VTISGVYRTDFYKKLSPMRLIVQ 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,177
Number of Sequences: 336
Number of extensions: 2962
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)