Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0128
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 28 1.00
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 28 1.00
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc... 28 1.00
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 28 1.3
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 27 2.3
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2... 27 2.3
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 26 4.0
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 26 5.3
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 26 5.3
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.3
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc... 26 5.3
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 5.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 25 7.0
SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomy... 25 7.0
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 25 7.0
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 25 9.3
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 25 9.3
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 9.3
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 25 9.3
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 25 9.3
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha... 25 9.3
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 28.3 bits (60), Expect = 1.00
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = -1
Query: 621 SDGTAGNHISIRLPKQMTSWTPSTYENNNFGHLSNGSLALFEARNFDSS 475
S GN S+ K + T NN HL N S L + R SS
Sbjct: 514 SKSVGGNIFSVNSKKHSVNINAKTAANNGLSHLQNFSEELLKKRKLFSS 562
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 28.3 bits (60), Expect = 1.00
Identities = 16/45 (35%), Positives = 28/45 (62%)
Frame = +1
Query: 457 LRESLT*TIKVPSLKKRQ*TVRQMPEIVILIRRRGP*RHLFGKTN 591
++E+L K+P L + T+++M ++V+ RRG + LFGK N
Sbjct: 1000 VKEALASAEKLPILSESTVTLQKMYDVVLEWIRRG--KRLFGKAN 1042
>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.3 bits (60), Expect = 1.00
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = +2
Query: 179 TLTGVSPLITNERLNESLTKWFGEDTTFTHWEYVGDTGKGDSYLSELIR 325
T+T S +N R ES+T G + +WE++ T KG+S++ IR
Sbjct: 294 TVTDDSTSPSNYRFIESVT--CGTPFVYENWEWIPVTIKGNSFMLNQIR 340
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 231 SPNGSARTQPSPIGSMSATPAR 296
SP+G+ PSPI S+ + P+R
Sbjct: 141 SPHGNTSNHPSPISSLESLPSR 162
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 215 RLNESLTKWFGEDTTFTHWEYVGDTGKGDSYLSELIR 325
+L+ L W D F H+ GD GK D +++ L+R
Sbjct: 214 QLSSPLGGW--RDRKFKHFIEGGDAGKRDEHINSLVR 248
>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 285
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 582 PKQMTSWTPSTYENNNFGHLSNGS 511
P+Q S TP+ Y N+N GH S S
Sbjct: 26 PRQPASPTPTAYLNSNDGHSSAAS 49
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 4.0
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 396 KTYLGA*RSAAMSSSITRSVSTRKSYL-NYQSSEPQKAPMNRSTNARNCYSHTS 554
K+Y + S+A SSS + S+S Y Y S+ P A N ++ + Y ++S
Sbjct: 112 KSYSDSSTSSARSSSTSGSISLYDDYYPAYSSNAPNTAISNYVSSGLSYYGNSS 165
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +2
Query: 272 EYVGDTGKGDSYLSELIRIKIYGLNSNKESKHVQCVLKSIPKNVSR 409
E GD KG S + I G N + +S H+Q + KSI K +R
Sbjct: 5 EAEGDILKGKSRIL-FPGTYIVGRNVSDDSSHIQVISKSISKRHAR 49
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.8 bits (54), Expect = 5.3
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +1
Query: 148 KAKQNGRRLQNVDRRVSSHHQRETERISHQMVRRGHNLHPLGVCRRHRQG*FLPQRVDSH 327
K K +R ++ +R+ + ++I Q R LH G H G ++VD
Sbjct: 519 KTKLENQR-RDKERQEELRRKEAMQKIEEQSKRDYDKLHGEG----HSLGINNVRKVDEL 573
Query: 328 QNLRPEFEQRVE 363
Q+L PE R+E
Sbjct: 574 QSLSPEMRMRIE 585
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 420 SAAMSSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTSTGSMTS 572
S++ SSS + S S+ S + SS P+ ST++ SH+S+ S +S
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSS----SHSSSSSSSS 226
>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 329 KIYGLN--SNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNEIS 454
++YG++ NK+ + + L K R++ FF+NEIS
Sbjct: 264 RVYGISFPDNKQMQEYKTFLAEAAKRDHRKIGRDQELFFFNEIS 307
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 462 RKSYLNYQSSEPQKAPMNRSTNAR-NCYSHTSTGSMTSFV 578
R L+ +SE K R A NC++HTS S+ SF+
Sbjct: 660 RLEQLSEFNSEKFKTVSKREVEALVNCFNHTSFTSLLSFL 699
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 57 DAETF*NSLFINSKTLFNN*EFFKYNSNSF*GKT 158
D +TF +SL+ N TLF + EF+ S+ G T
Sbjct: 239 DKQTFKSSLYENLSTLFKSDEFWSLVSSPQDGVT 272
>SPAC1002.14 |itt1||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 435
Score = 25.4 bits (53), Expect = 7.0
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 471 YLNYQSSEPQKA 506
YLNYQ +EP+KA
Sbjct: 321 YLNYQENEPEKA 332
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 594 SIRLPKQMTSWTPSTYENNNFGHLSNGSLALFEA 493
S+R + SW S Y++ +F + GS+ ++ A
Sbjct: 542 SLRTYLDLMSWEDSVYDDPSFREAAQGSIEIYFA 575
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +2
Query: 173 FKTLTGVSPLITNERLNESLTKWFGEDTTFTHWEYVGDTGKGDSYLSEL 319
F + +SP+ TN L ESL K + + GD KG + +L
Sbjct: 136 FVHMDNISPVTTNGSLKESLRK-YSSIIAVNIFSETGDLKKGIAIFQDL 183
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 25.0 bits (52), Expect = 9.3
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +2
Query: 173 FKTLTGVSPLITNERLNESLTKWFGEDTTFTHWEYVGDTGKGDSYLSELIRIKIYGLNSN 352
F LT P T+E +N + + F H +Y GDT +SY+S L + L S+
Sbjct: 359 FLLLTN-QPRFTDELVNFKSSNEMMMNLLFIHVKYSGDT--ENSYMSSLAGYCLQQLVSH 415
Query: 353 KESKHVQC 376
++ C
Sbjct: 416 EKLVKAAC 423
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -1
Query: 312 LR*ESPLPVSPTYSQWVKVVSSPNHLVRDSFS--LSLVMRGDTPVNVLKSSA 163
L+ +SP+P + +YS ++ SP+ DS S + + DT V K+ A
Sbjct: 423 LQPKSPIPATKSYSATIQTPRSPSLRRADSTSHIIKVPHLPDTSVKTAKTGA 474
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 9.3
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +3
Query: 405 LGA*RSAAMSSSITRSVSTRKSYLNYQSSEPQKAPMN 515
LG RSA+M S +++ +Y ++ S +++P+N
Sbjct: 306 LGLNRSASMMSRTPNTLNRPSNYRSHSSMGTRRSPLN 342
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 25.0 bits (52), Expect = 9.3
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 436 ELIAAERQAPRYVFWDAL*YALDVLRLFVRI 344
E ++A+ Q P+Y++W+ Y L R +
Sbjct: 170 EFVSAKGQCPKYLYWNNKSYLLKKKRFLKEV 200
>SPAC926.06c |||leucine-rich repeat protein,
unknown|Schizosaccharomyces pombe|chr 1|||Manual
Length = 621
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +2
Query: 374 CVLKSIPKNVSRRL-TFRSNEFFYNEISFYEKVLPELSKFRASKSANEPFDKC 529
C LKSIPKNV L + S + NE++ L EL + + A+ C
Sbjct: 342 CKLKSIPKNVFLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGC 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,529,223
Number of Sequences: 5004
Number of extensions: 52207
Number of successful extensions: 192
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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