Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-0128
(642 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical pr... 30 1.2
U55364-11|AAA97976.1| 196|Caenorhabditis elegans Hypothetical p... 29 2.8
U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domai... 29 2.8
AC084196-2|AAK39622.1| 355|Caenorhabditis elegans Hypothetical ... 29 2.8
AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical... 29 3.7
DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-t... 28 4.9
AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-t... 28 4.9
AF047663-5|AAC04446.2| 247|Caenorhabditis elegans Hypothetical ... 28 4.9
AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel... 28 4.9
AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel... 28 4.9
AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel... 28 4.9
Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z54284-5|CAA91062.1| 444|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF040657-1|AAB95054.1| 758|Caenorhabditis elegans Hypothetical ... 28 6.5
Z81514-5|CAB04192.2| 611|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 27 8.6
U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone... 27 8.6
AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear recep... 27 8.6
AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormo... 27 8.6
>U39470-3|AAC71120.1| 377|Caenorhabditis elegans Hypothetical
protein T08H4.3 protein.
Length = 377
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = -1
Query: 603 NHISIRLPKQMTSWTPSTYENNNFGHLSNGSLALFEARNFDSSGKT 466
+H R+ +SWT + Y + N +NGS + N+ + G T
Sbjct: 316 SHAMGRIAPDFSSWTSANYRSLNIAGFNNGSTIFNPSVNYSAFGAT 361
>U55364-11|AAA97976.1| 196|Caenorhabditis elegans Hypothetical
protein F21C10.4 protein.
Length = 196
Score = 29.1 bits (62), Expect = 2.8
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +3
Query: 417 RSAAMSSSITRSVSTRKSYLNYQSSEPQKAPMNRSTNARNCYSHTSTGSMTSFVWEDES- 593
RS S S+R SYLNY SS + +T+ N Y T T T + + +
Sbjct: 47 RSGGAGGGKFHSSSSRSSYLNYDSSAFRSNVFKPTTS--NSYFATGTSGSTHVIIQPATP 104
Query: 594 -IYDYRRCRQTGRFR 635
IYD G +R
Sbjct: 105 IIYDNHHYYWHGYYR 119
>U43375-1|AAA83618.1| 709|Caenorhabditis elegans Sulfatase domain
protein protein 1 protein.
Length = 709
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = +3
Query: 459 TRKSYLNYQSSEPQKA---PMNRSTNARNCYSHTSTGSMTSFVWEDE 590
++K YL Y+ +PQ P + S NC++HT++ T +W +E
Sbjct: 553 SKKHYLKYKK-KPQNGSLKPKDCSLPQMNCFTHTASHWKTPPLWPEE 598
>AC084196-2|AAK39622.1| 355|Caenorhabditis elegans Hypothetical
protein Y55D5A.3 protein.
Length = 355
Score = 29.1 bits (62), Expect = 2.8
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 218 LNESLTKWFGEDTTFTHWEYVGDTGKGDSYLSELIRIKIYGLNSNKESKHVQCVLKSIP 394
LN +WF +T F +W+ GD D ++ + ++K G + E V+ VL ++P
Sbjct: 271 LNVDANQWFLVETNFDNWKKQGD----DRRITAIQKLKELGRRNFDEKSMVE-VLSTVP 324
>AC024809-10|AAF59547.1| 272|Caenorhabditis elegans Hypothetical
protein Y53G8AR.1 protein.
Length = 272
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/84 (23%), Positives = 40/84 (47%)
Frame = +2
Query: 317 LIRIKIYGLNSNKESKHVQCVLKSIPKNVSRRLTFRSNEFFYNEISFYEKVLPELSKFRA 496
LI + YGL + + + + ++ P + T S E Y E+ + +P+L+K+R
Sbjct: 10 LIVLAFYGL-AGAQDANPEVTTEAAPVEAT---TPTSQEQLYEEVK--KSFIPKLNKYRR 63
Query: 497 SKSANEPFDKCPKLLFSYVDGVHD 568
+ + +L++ V+G HD
Sbjct: 64 EVAKRLNWTNMNELVYGEVEGYHD 87
>DQ917240-1|ABI94563.1| 1797|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1797
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 582 PKQMTSWTPSTYENNNFGHLSNGSLALFEARNF 484
PK M + N NF H+ N LALFE +F
Sbjct: 1067 PKIMVPRVWTNPRNFNFDHVGNAMLALFETLSF 1099
>AY555271-1|AAS65871.2| 1831|Caenorhabditis elegans four domain-type
voltage-gatedion channel alpha-1 subunit protein.
Length = 1831
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 582 PKQMTSWTPSTYENNNFGHLSNGSLALFEARNF 484
PK M + N NF H+ N LALFE +F
Sbjct: 1101 PKIMVPRVWTNPRNFNFDHVGNAMLALFETLSF 1133
>AF047663-5|AAC04446.2| 247|Caenorhabditis elegans Hypothetical
protein W09G12.8 protein.
Length = 247
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 431 EFFYNEISFYEKVLPELSKFRASKSANEPFDKCPKLLFS-YVDGVHDVI 574
E Y E+ E P L++F A + +N P P+L S YV+ +DV+
Sbjct: 119 ECHYPELKDVELEDPVLNRFGAFEGSNTPIKLSPQLSQSNYVEFTYDVV 167
>AF045640-6|AAU05588.1| 1562|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 582 PKQMTSWTPSTYENNNFGHLSNGSLALFEARNF 484
PK M + N NF H+ N LALFE +F
Sbjct: 1159 PKIMVPRVWTNPRNFNFDHVGNAMLALFETLSF 1191
>AF045640-5|AAM81121.1| 1913|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
c protein.
Length = 1913
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 582 PKQMTSWTPSTYENNNFGHLSNGSLALFEARNF 484
PK M + N NF H+ N LALFE +F
Sbjct: 1212 PKIMVPRVWTNPRNFNFDHVGNAMLALFETLSF 1244
>AF045640-4|AAU05590.1| 1861|Caenorhabditis elegans Novel channel
type/putative nematodecalcium channel protein 1, isoform
d protein.
Length = 1861
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 582 PKQMTSWTPSTYENNNFGHLSNGSLALFEARNF 484
PK M + N NF H+ N LALFE +F
Sbjct: 1131 PKIMVPRVWTNPRNFNFDHVGNAMLALFETLSF 1163
>Z81460-2|CAB03831.1| 439|Caenorhabditis elegans Hypothetical
protein C04A11.2 protein.
Length = 439
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +1
Query: 307 PQRVDSHQNLRPEFEQRVEARPVRIKEHPKKR 402
P R+ +N RPEF +RVEAR I+ +KR
Sbjct: 315 PPRIHLERN-RPEFIERVEARQSIIRAASEKR 345
>Z54284-5|CAA91062.1| 444|Caenorhabditis elegans Hypothetical
protein D2085.6 protein.
Length = 444
Score = 27.9 bits (59), Expect = 6.5
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 307 VGITLAGVADILPMGEGCVLAEPFGERFVQSLV-GDERRHAG 185
V + GV ++LP+GE L EP + V +L+ +RR G
Sbjct: 306 VSTRVGGVPEVLPIGEFISLEEPVPDDLVDALLKAVDRREKG 347
>AF040657-1|AAB95054.1| 758|Caenorhabditis elegans Hypothetical
protein T20H9.6 protein.
Length = 758
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 109 ITENFLNIIQILFKAKQNGRRLQNVDRRVSSHHQRETERISH 234
I +N N+I+I AK N ++ + + S H + T+ H
Sbjct: 283 IQKNIDNVIKIAKSAKLNAESVEQLSNMLLSRHSKSTKASKH 324
>Z81514-5|CAB04192.2| 611|Caenorhabditis elegans Hypothetical
protein F26F2.6 protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = +2
Query: 188 GVSPLITNERLNESLTKWFGEDTTFTHWEYVGDTGKGDSYLSELIRIKI------YGLNS 349
G+ + TN+ LN L + ED T +VG K D++ L ++KI + LN+
Sbjct: 337 GLMTVATNDTLNYFLKGDYLEDIKMTPRFHVGIIKKDDTWTWRLPQLKIDQSPIPWSLNT 396
Query: 350 NKESKHVQCVLKSIPKN 400
K + +C +P +
Sbjct: 397 RKVADTEKCGYVQLPSD 413
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
protein W05B2.4 protein.
Length = 2265
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 161 MADDFKTLTGVSPLITNERL 220
+ DD+K L GVSP +T E L
Sbjct: 360 LIDDYKVLWGVSPKLTEEEL 379
>U41296-1|AAA93297.1| 579|Caenorhabditis elegans Steroid hormone
receptor-like proteinprotein.
Length = 579
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 585 LPKQMTSWTPSTYENNNFGHLSNGSL-ALFEARNF 484
LP SW P Y + GH + FEAR+F
Sbjct: 360 LPADYASWIPQDYGHPTAGHEGKSDMHNFFEARDF 394
>AY204170-1|AAO39174.1| 579|Caenorhabditis elegans nuclear receptor
NHR-47 protein.
Length = 579
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 585 LPKQMTSWTPSTYENNNFGHLSNGSL-ALFEARNF 484
LP SW P Y + GH + FEAR+F
Sbjct: 360 LPADYASWIPQDYGHPTAGHEGKSDMHNFFEARDF 394
>AF067936-1|AAC19212.2| 579|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 47 protein.
Length = 579
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = -1
Query: 585 LPKQMTSWTPSTYENNNFGHLSNGSL-ALFEARNF 484
LP SW P Y + GH + FEAR+F
Sbjct: 360 LPADYASWIPQDYGHPTAGHEGKSDMHNFFEARDF 394
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,836,884
Number of Sequences: 27780
Number of extensions: 287022
Number of successful extensions: 1025
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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